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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186876 (12 seq.)
>WENV180448245
OBXE01002341
[OBXE] human gut metagenome; faeces
2210
2134
-
Ile
GAT
[ENA]
¢þ
>WENV180472989
OBYQ01016158
[OBYQ] human gut metagenome; faeces
704
628
-
Ile
GAT
[ENA]
¢þ
>WENV180542090
OCHS01056278
[OCHS] human gut metagenome; human gut
203
279
+
Ile
GAT
[ENA]
¢þ
>WENV180744431
ODHJ01034229
[ODHJ] human metagenome; G_DNA_Stool
376
300
-
Ile
GAT
[ENA]
¢þ
>WENV180826766
ODJZ01030745
[ODJZ] human metagenome; G_DNA_Stool
500
424
-
Ile
GAT
[ENA]
¢þ
>WENV180957555
ODUK01074280
[ODUK] human metagenome; G_DNA_Stool
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181119100
OEFH01086307
[OEFH] human metagenome; G_DNA_Stool
155
231
+
Ile
GAT
[ENA]
¢þ
>WENV181250593
OFFN01036112
[OFFN] mouse gut metagenome; faeces
121
197
+
Ile
GAT
[ENA]
¢þ
>WENV181259137
OFFV01023689
[OFFV] mouse gut metagenome; faeces
1288
1212
-
Ile
GAT
[ENA]
¢þ
>WENV181276715
OFGK01024271
[OFGK] mouse gut metagenome; faeces
102
178
+
Ile
GAT
[ENA]
¢þ
>WENV181283984
OFGQ01067071
[OFGQ] mouse gut metagenome; faeces
635
559
-
Ile
GAT
[ENA]
¢þ
>WENV181395348
OFRZ01041745
[OFRZ] human gut metagenome; human gut
162
238
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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