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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187024 (25 seq.)
>W1710785133
LJHP01000005
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
76418
76494
+
Arg
TCT
[ENA]
¡û
>W1710894107
LNFK01000044
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
107885
107961
+
Arg
TCT
[ENA]
¡û
>W131058853
ANFZ01000002
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
254885
254961
+
Arg
TCT
[ENA]
¡û
>C171049940
CP016460
Alphaproteobacteria
Blastomonas sp. RAC04 [CP016460]
2464298
2464222
-
Arg
TCT
-
¡û
>C171074098
CP018154
Alphaproteobacteria
Sphingorhabdus lutea LPB0140 [CP018154]
1292586
1292510
-
Arg
TCT
-
¡û
>WENV180391039
OBPM01002568
[OBPM] marine metagenome; ENVO:00002010
372
448
+
Arg
TCT
[ENA]
¢þ
>WENV180593915
OCOY01003262
[OCOY] marine metagenome; ENVO:00002010
1126
1050
-
Arg
TCT
[ENA]
¢þ
>WENV181170549
OEIV010057096
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
707
783
+
Arg
TCT
[ENA]
¢þ
>WENV181226846
OFDN01000163
[OFDN] hot springs metagenome; Water
64765
64841
+
Arg
TCT
[ENA]
¢þ
>WENV181368476
OFQL01008253
[OFQL] freshwater metagenome; Freshwater Lake
593
669
+
Arg
TCT
[ENA]
¢þ
>WENV181370339
OFQS01004535
[OFQS] freshwater metagenome; Freshwater Lake
1114
1190
+
Arg
TCT
[ENA]
¢þ
>WENV181384928
OFRI01020629
[OFRI] wastewater metagenome; Exp Tend VB 90WW
304
380
+
Arg
TCT
[ENA]
¢þ
>WENV181401084
OFSF01052913
[OFSF] wastewater metagenome; Exp Tend VB 100WW
268
192
-
Arg
TCT
[ENA]
¢þ
>W141230368
BASZ01000001
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
659002
658926
-
Arg
TCT
[ENA]
¡û
>WENV183725806
PJQF01019126
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
207
283
+
Arg
TCT
[ENA]
¢þ
>WENV170709954
LNFM01000976
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
39714
39790
+
Arg
TCT
[ENA]
¢þ
>WENV170712535
LNFM01014562
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9149
9073
-
Arg
TCT
[ENA]
¢þ
>C181220347
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
786801
786877
+
Arg
TCT
-
¡û
>C191017424
CP020083
Alphaproteobacteria
Blastomonas fulva T2 [CP020083]
674660
674584
-
Arg
TCT
-
¡û
>C191121065
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2979809
2979885
+
Arg
TCT
-
¡û
>W1911532526
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
1120170
1120246
+
Arg
TCT
[ENA]
¡û
>W1511352544
JROG01000009
Alphaproteobacteria
Sphingomonas sp. 35-24ZXX 35-24ZXX 35-24zxx [JROG]
209378
209454
+
Arg
TCT
[ENA]
¡û
>W1610648939
LJHP01000005
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
76418
76494
+
Arg
TCT
[ENA]
¡û
>W1610754373
LNFK01000044
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
107885
107961
+
Arg
TCT
[ENA]
¡û
>W1710593927
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
354319
354243
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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