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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187036 (92 seq.)
>W1710807296
LKCX01000001
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
154604
154680
+
Met
CAT
[ENA]
¡û
>W1711394893
MESN01000344
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
69
145
+
Met
CAT
[ENA]
¡û
>W1711395021
MESQ01000083
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
16645
16569
-
Met
CAT
[ENA]
¡û
>W1711395033
MESR01000251
Betaproteobacteria
Burkholderiales bacterium RIFOXYD2_FULL_59_8 [MESR]
1931
1855
-
Met
CAT
[ENA]
¡û
>W1711583953
MNXW01000068
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
8227
8151
-
Met
CAT
[ENA]
¡û
>W1711709065
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
69416
69340
-
Met
CAT
[ENA]
¡û
>W1711721712
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
4257811
4257887
+
Met
CAT
[ENA]
¡û
>W1712096706
NIAZ01000008
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
80292
80216
-
Met
CAT
[ENA]
¡û
>W131227111
AUEX01000006
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
109591
109667
+
Met
CAT
[ENA]
¡û
>C017305
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
3570807
3570883
+
Met
CAT
[Ensembl]
¡û
>C171091748
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
898525
898449
-
Met
CAT
-
¡û
>C171118085
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
765950
765874
-
Met
CAT
-
¡û
>C171118136
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
755515
755439
-
Met
CAT
-
¡û
>C171118162
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
3215913
3215989
+
Met
CAT
-
¡û
>C171118240
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
863468
863392
-
Met
CAT
-
¡û
>C171120938
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
3150156
3150232
+
Met
CAT
-
¡û
>WENV180283582
OBID01000867
[OBID] metagenome; sludge
2055
2131
+
Met
CAT
[ENA]
¢þ
>WENV180390943
OBPM01000036
[OBPM] marine metagenome; ENVO:00002010
11697
11773
+
Met
CAT
[ENA]
¢þ
>WENV180594082
OCOY01031114
[OCOY] marine metagenome; ENVO:00002010
219
143
-
Met
CAT
[ENA]
¢þ
>WENV181323851
OFKZ01013698
[OFKZ] marine metagenome; sea ice
374
298
-
Met
CAT
[ENA]
¢þ
>WENV181363101
OFOS01000010
[OFOS] sediment metagenome; Lake sediment
77048
77124
+
Met
CAT
[ENA]
¢þ
>WENV181364503
OFOW01000248
[OFOW] sediment metagenome; Lake sediment
3092
3168
+
Met
CAT
[ENA]
¢þ
>WENV181364552
OFOY01000031
[OFOY] sediment metagenome; Lake sediment
31849
31925
+
Met
CAT
[ENA]
¢þ
>WENV181364587
OFOZ01000038
[OFOZ] sediment metagenome; Lake sediment
12763
12839
+
Met
CAT
[ENA]
¢þ
>WENV181364665
OFPA01000055
[OFPA] sediment metagenome; Lake sediment
4504
4428
-
Met
CAT
[ENA]
¢þ
>WENV181364698
OFPB01000006
[OFPB] sediment metagenome; Lake sediment
34102
34026
-
Met
CAT
[ENA]
¢þ
>WENV181364846
OFPE01002183
[OFPE] sediment metagenome; Lake sediment
808
732
-
Met
CAT
[ENA]
¢þ
>WENV181364943
OFPG01000237
[OFPG] sediment metagenome; Lake sediment
4920
4844
-
Met
CAT
[ENA]
¢þ
>WENV181365023
OFPH01000730
[OFPH] sediment metagenome; Lake sediment
1497
1573
+
Met
CAT
[ENA]
¢þ
>WENV181365027
OFPI01000002
[OFPI] sediment metagenome; Lake sediment
4513
4437
-
Met
CAT
[ENA]
¢þ
>WENV181365086
OFPJ01000043
[OFPJ] sediment metagenome; Lake sediment
4480
4404
-
Met
CAT
[ENA]
¢þ
>WENV181365124
OFPK01000002
[OFPK] sediment metagenome; Lake sediment
4537
4461
-
Met
CAT
[ENA]
¢þ
>WENV181365166
OFPL01000002
[OFPL] sediment metagenome; Lake sediment
137269
137345
+
Met
CAT
[ENA]
¢þ
>WENV181365228
OFPM01000309
[OFPM] sediment metagenome; Lake sediment
1030
1106
+
Met
CAT
[ENA]
¢þ
>WENV181365299
OFPN01000056
[OFPN] sediment metagenome; Lake sediment
19039
19115
+
Met
CAT
[ENA]
¢þ
>WENV181365320
OFPO01000047
[OFPO] sediment metagenome; Lake sediment
4504
4428
-
Met
CAT
[ENA]
¢þ
>WENV181365418
OFPQ01001336
[OFPQ] sediment metagenome; Lake sediment
685
761
+
Met
CAT
[ENA]
¢þ
>WENV181369701
OFQP01024211
[OFQP] freshwater metagenome; Freshwater Lake
331
407
+
Met
CAT
[ENA]
¢þ
>WENV181370005
OFQR01005531
[OFQR] freshwater metagenome; Freshwater Lake
336
412
+
Met
CAT
[ENA]
¢þ
>WENV181370418
OFQS01010041
[OFQS] freshwater metagenome; Freshwater Lake
465
541
+
Met
CAT
[ENA]
¢þ
>WENV181379254
OFRD01000125
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2064
1988
-
Met
CAT
[ENA]
¢þ
>WENV181383929
OFRH01001282
[OFRH] wastewater metagenome; Exp Tend NO 100WW
2917
2993
+
Met
CAT
[ENA]
¢þ
>WENV181395892
OFSB01018069
[OFSB] freshwater metagenome; Freshwater Lake
317
241
-
Met
CAT
[ENA]
¢þ
>WENV181401298
OFSF01113362
[OFSF] wastewater metagenome; Exp Tend VB 100WW
400
324
-
Met
CAT
[ENA]
¢þ
>W141278744
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
14406
14482
+
Met
CAT
[ENA]
¡û
>WENV183661092
ORJL010080388
[ORJL] groundwater metagenome; groundwater
362
286
-
Met
CAT
[ENA]
¢þ
>WENV183681364
ORMF010296200
[ORMF] groundwater metagenome; groundwater
414
338
-
Met
CAT
[ENA]
¢þ
>WENV170639751
JFJP01006829
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170639788
JFJP01007890
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
470
394
-
Met
CAT
[ENA]
¢þ
>WENV170707579
LNAP01026199
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2147
2071
-
Met
CAT
[ENA]
¢þ
>WENV170707927
LNAP01040184
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1924
2000
+
Met
CAT
[ENA]
¢þ
>WENV170708283
LNAP01065316
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1147
1071
-
Met
CAT
[ENA]
¢þ
>WENV170708765
LNAQ01000787
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3809
3885
+
Met
CAT
[ENA]
¢þ
>WENV170711386
LNFM01004993
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11085
11009
-
Met
CAT
[ENA]
¢þ
>WENV170712860
LNFM01019027
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19505
19429
-
Met
CAT
[ENA]
¢þ
>WENV170712931
LNFM01020783
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3074
2998
-
Met
CAT
[ENA]
¢þ
>WENV170714478
LNFM01076130
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
317
393
+
Met
CAT
[ENA]
¢þ
>WENV170714540
LNFM01080058
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
314
390
+
Met
CAT
[ENA]
¢þ
>WENV170714629
LNFM01088735
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
14
-
Met
CAT
[ENA]
¢þ
>WENV170715154
LNFM01139125
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
584
508
-
Met
CAT
[ENA]
¢þ
>WENV170961846
MLJW01002549
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2570
2494
-
Met
CAT
[ENA]
¢þ
>WENV170975105
MTKY01091755
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
721
645
-
Met
CAT
[ENA]
¢þ
>W141561753
JHYS01000005
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
61036
61112
+
Met
CAT
[ENA]
¡û
>W09104877
AANM01000017
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
30383
30459
+
Met
CAT
[ENA]
¡û
>W1910700238
MESI01000039
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
6536
6612
+
Met
CAT
[ENA]
¡û
>W1910888465
NERU01000026
Betaproteobacteria
Limnohabitans sp. WS1 [NERU]
10249
10173
-
Met
CAT
[ENA]
¡û
>W1910888490
NERV01000002
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
836230
836154
-
Met
CAT
[ENA]
¡û
>W1910888931
NESG01000003
Betaproteobacteria
Limnohabitans sp. G3-2 [NESG]
219422
219346
-
Met
CAT
[ENA]
¡û
>W1910888982
NESH01000003
Betaproteobacteria
Limnohabitans sp. Bal53 [NESH]
279661
279737
+
Met
CAT
[ENA]
¡û
>W1910889077
NESJ01000018
Betaproteobacteria
Limnohabitans sp. 2KL-51 [NESJ]
67885
67961
+
Met
CAT
[ENA]
¡û
>W1910889120
NESK01000034
Betaproteobacteria
Limnohabitans sp. 2KL-17 [NESK]
509
433
-
Met
CAT
[ENA]
¡û
>W1910889125
NESL01000001
Betaproteobacteria
Limnohabitans sp. 2KL-1 [NESL]
840695
840771
+
Met
CAT
[ENA]
¡û
>W1910889178
NESM01000001
Betaproteobacteria
Limnohabitans sp. 15K [NESM]
1029460
1029384
-
Met
CAT
[ENA]
¡û
>W1910889239
NESN01000002
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
31203
31127
-
Met
CAT
[ENA]
¡û
>W1911775413
QXNC01000012
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
92484
92408
-
Met
CAT
[ENA]
¡û
>SRA1003630
SRR002327.76046
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
224
148
-
Met
CAT
[SRA]
>W1810570307
QEII01000269
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
142494
142570
+
Met
CAT
[ENA]
¡û
>W1810697071
QLTU01000006
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
61829
61753
-
Met
CAT
[ENA]
¡û
>W1810750695
QOZT01000036
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
21108
21184
+
Met
CAT
[ENA]
¡û
>W1510720099
CXON01000006
Betaproteobacteria
Limnohabitans sp. 2KL-3 [CXON]
182130
182054
-
Met
CAT
[ENA]
¡û
>W1510720128
CXOO01000010
Betaproteobacteria
Limnohabitans sp. DM1 [CXOO]
319252
319176
-
Met
CAT
[ENA]
¡û
>W1510720180
CXOP01000002
Betaproteobacteria
Limnohabitans sp. 2KL-27 [CXOP]
901257
901333
+
Met
CAT
[ENA]
¡û
>W1511691387
LFYT01000003
Betaproteobacteria
Limnohabitans planktonicus II-D5 [LFYT]
794517
794441
-
Met
CAT
[ENA]
¡û
>C161037068
CP011774
Betaproteobacteria
Limnohabitans sp. 63ED37-2 [CP011774]
2599562
2599486
-
Met
CAT
[Ensembl]
¡û
>W121112438
ALKN01000043
Betaproteobacteria
Limnohabitans sp. Rim28 [ALKN]
22343
22419
+
Met
CAT
[ENA]
¡û
>W121112482
ALKO01000020
Betaproteobacteria
Limnohabitans sp. Rim47 [ALKO]
131522
131598
+
Met
CAT
[ENA]
¡û
>W1610189989
FBYA01000005
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
23839
23763
-
Met
CAT
[ENA]
¡û
>W1610671400
LKCX01000001
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
154604
154680
+
Met
CAT
[ENA]
¡û
>W1710191605
FBYA01000005
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
23839
23763
-
Met
CAT
[ENA]
¡û
>W1710532506
FNQJ01000002
Betaproteobacteria
Acidovorax soli [FNQJ]
260815
260891
+
Met
CAT
[ENA]
¡û
>W1710551542
FOGD01000011
Betaproteobacteria
Giesbergeria anulus [FOGD]
59617
59693
+
Met
CAT
[ENA]
¡û
>W1710557393
FOKZ01000007
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
113980
113904
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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