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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187351 (38 seq.)
>WENV180708820
ODFJ01008416
[ODFJ] human metagenome; G_DNA_Tongue dorsum
2908
2833
-
Ile2
CAT
[ENA]
¢þ
>WENV180724387
ODGR01000662
[ODGR] human metagenome; G_DNA_Tongue dorsum
25591
25516
-
Ile2
CAT
[ENA]
¢þ
>WENV180729273
ODGU01309267
[ODGU] human metagenome; G_DNA_Supragingival plaque
138
63
-
Ile2
CAT
[ENA]
¢þ
>WENV180758277
ODHW01014447
[ODHW] human metagenome; G_DNA_Tongue dorsum
567
642
+
Ile2
CAT
[ENA]
¢þ
>WENV180768249
ODIG01004139
[ODIG] human metagenome; G_DNA_Tongue dorsum
6552
6477
-
Ile2
CAT
[ENA]
¢þ
>WENV180777678
ODIL01049895
[ODIL] human metagenome; G_DNA_Supragingival plaque
242
317
+
Ile2
CAT
[ENA]
¢þ
>WENV180803318
ODJE01086816
[ODJE] human metagenome; G_DNA_Tongue dorsum
121
196
+
Ile2
CAT
[ENA]
¢þ
>WENV180808108
ODJI01060756
[ODJI] human metagenome; G_DNA_Tongue dorsum
164
239
+
Ile2
CAT
[ENA]
¢þ
>WENV180820613
ODJR01016132
[ODJR] human metagenome; G_DNA_Tongue dorsum
564
639
+
Ile2
CAT
[ENA]
¢þ
>WENV180831455
ODKB01208823
[ODKB] human metagenome; G_DNA_Tongue dorsum
129
204
+
Ile2
CAT
[ENA]
¢þ
>WENV180844636
ODKN01270513
[ODKN] human metagenome; G_DNA_Supragingival plaque
179
104
-
Ile2
CAT
[ENA]
¢þ
>WENV180853501
ODKW01147125
[ODKW] human metagenome; G_DNA_Tongue dorsum
115
40
-
Ile2
CAT
[ENA]
¢þ
>WENV180853798
ODKX01000079
[ODKX] human metagenome; G_DNA_Tongue dorsum
249
324
+
Ile2
CAT
[ENA]
¢þ
>WENV180863556
ODLH01000580
[ODLH] human metagenome; G_DNA_Tongue dorsum
17410
17335
-
Ile2
CAT
[ENA]
¢þ
>WENV180873022
ODLP01000614
[ODLP] human metagenome; G_DNA_Tongue dorsum
17496
17421
-
Ile2
CAT
[ENA]
¢þ
>WENV180884285
ODMC01075242
[ODMC] human metagenome; G_DNA_Tongue dorsum
239
314
+
Ile2
CAT
[ENA]
¢þ
>WENV180896858
ODNI01002831
[ODNI] human metagenome; G_DNA_Tongue dorsum
8137
8062
-
Ile2
CAT
[ENA]
¢þ
>WENV180900989
ODOJ01022343
[ODOJ] human metagenome; G_DNA_Tongue dorsum
222
297
+
Ile2
CAT
[ENA]
¢þ
>WENV180901982
ODOK01010392
[ODOK] human metagenome; G_DNA_Tongue dorsum
1856
1781
-
Ile2
CAT
[ENA]
¢þ
>WENV180920202
ODTH01002174
[ODTH] human metagenome; G_DNA_Tongue dorsum
8661
8586
-
Ile2
CAT
[ENA]
¢þ
>WENV180925381
ODTK01120666
[ODTK] human metagenome; G_DNA_Supragingival plaque
274
199
-
Ile2
CAT
[ENA]
¢þ
>WENV180931249
ODTP01002344
[ODTP] human metagenome; G_DNA_Tongue dorsum
149
224
+
Ile2
CAT
[ENA]
¢þ
>WENV180955431
ODUJ01124690
[ODUJ] human metagenome; G_DNA_Tongue dorsum
196
121
-
Ile2
CAT
[ENA]
¢þ
>WENV180959922
ODUM01005392
[ODUM] human metagenome; G_DNA_Tongue dorsum
3928
3853
-
Ile2
CAT
[ENA]
¢þ
>WENV181034091
ODXN01065259
[ODXN] human metagenome; G_DNA_Tongue dorsum
277
352
+
Ile2
CAT
[ENA]
¢þ
>WENV181038854
ODXQ01005560
[ODXQ] human metagenome; G_DNA_Tongue dorsum
5886
5811
-
Ile2
CAT
[ENA]
¢þ
>WENV181044774
ODXV01036557
[ODXV] human metagenome; G_DNA_Tongue dorsum
565
640
+
Ile2
CAT
[ENA]
¢þ
>WENV181046249
ODXW01013794
[ODXW] human metagenome; G_DNA_Tongue dorsum
1243
1318
+
Ile2
CAT
[ENA]
¢þ
>WENV181057462
ODYL01000172
[ODYL] human metagenome; G_DNA_Tongue dorsum
281
356
+
Ile2
CAT
[ENA]
¢þ
>WENV181074355
OEAO01006539
[OEAO] human metagenome; G_DNA_Tongue dorsum
274
349
+
Ile2
CAT
[ENA]
¢þ
>WENV181085777
OEAX01066228
[OEAX] human metagenome; G_DNA_Tongue dorsum
102
177
+
Ile2
CAT
[ENA]
¢þ
>WENV181087526
OEAY01058759
[OEAY] human metagenome; G_DNA_Tongue dorsum
167
92
-
Ile2
CAT
[ENA]
¢þ
>WENV181094486
OEBY01000230
[OEBY] human metagenome; G_DNA_Tongue dorsum
253
328
+
Ile2
CAT
[ENA]
¢þ
>WENV181103196
OECT01044947
[OECT] human metagenome; G_DNA_Tongue dorsum
306
231
-
Ile2
CAT
[ENA]
¢þ
>WENV181105393
OEED01003593
[OEED] human metagenome; G_DNA_Tongue dorsum
6622
6547
-
Ile2
CAT
[ENA]
¢þ
>WENV181113676
OEEL01064318
[OEEL] human metagenome; G_DNA_Tongue dorsum
305
230
-
Ile2
CAT
[ENA]
¢þ
>WENV181139378
OEGN01007493
[OEGN] human metagenome; G_DNA_Tongue dorsum
3337
3412
+
Ile2
CAT
[ENA]
¢þ
>W09125558
ACIN02000001
Bacillota
Abiotrophia defectiva ATCC 49176 [ACIN]
439
514
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK