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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187632 (104 seq.)
>W131164192
ARAI01000037
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
39492
39416
-
Arg
TCG
[ENA]
¡û
>W131000016
ADDA01000004
Bacteroidota
Capnocytophaga granulosa ATCC 51502 [ADDA]
371961
371885
-
Arg
TCG
[ENA]
¡û
>WENV180011143
FLSI01211990
[FLSI] metagenome; saliva
25
99
+
Arg
TCG
[ENA]
¢þ
>WENV180727056
ODGU01001818
[ODGU] human metagenome; G_DNA_Supragingival plaque
6328
6254
-
Arg
TCG
[ENA]
¢þ
>WENV180727161
ODGU01002659
[ODGU] human metagenome; G_DNA_Supragingival plaque
8922
8998
+
Arg
TCG
[ENA]
¢þ
>WENV180727276
ODGU01003812
[ODGU] human metagenome; G_DNA_Supragingival plaque
6312
6238
-
Arg
TCG
[ENA]
¢þ
>WENV180732575
ODGY01001524
[ODGY] human metagenome; G_DNA_Supragingival plaque
5421
5495
+
Arg
TCG
[ENA]
¢þ
>WENV180732649
ODGY01002074
[ODGY] human metagenome; G_DNA_Supragingival plaque
3327
3401
+
Arg
TCG
[ENA]
¢þ
>WENV180733940
ODGZ01001475
[ODGZ] human metagenome; G_DNA_Supragingival plaque
6790
6864
+
Arg
TCG
[ENA]
¢þ
>WENV180738619
ODHD01000161
[ODHD] human metagenome; G_DNA_Supragingival plaque
17126
17200
+
Arg
TCG
[ENA]
¢þ
>WENV180738624
ODHD01000170
[ODHD] human metagenome; G_DNA_Supragingival plaque
8905
8829
-
Arg
TCG
[ENA]
¢þ
>WENV180749930
ODHS01000133
[ODHS] human metagenome; G_DNA_Supragingival plaque
24672
24598
-
Arg
TCG
[ENA]
¢þ
>WENV180755068
ODHU01011991
[ODHU] human metagenome; G_DNA_Supragingival plaque
744
670
-
Arg
TCG
[ENA]
¢þ
>WENV180765364
ODIB01112577
[ODIB] human metagenome; G_DNA_Supragingival plaque
193
119
-
Arg
TCG
[ENA]
¢þ
>WENV180767672
ODIG01000382
[ODIG] human metagenome; G_DNA_Tongue dorsum
25928
25854
-
Arg
TCG
[ENA]
¢þ
>WENV180768739
ODIG01015063
[ODIG] human metagenome; G_DNA_Tongue dorsum
782
856
+
Arg
TCG
[ENA]
¢þ
>WENV180776501
ODIK01049505
[ODIK] human metagenome; G_DNA_Tongue dorsum
110
36
-
Arg
TCG
[ENA]
¢þ
>WENV180778116
ODIM01000649
[ODIM] human metagenome; G_DNA_Supragingival plaque
10280
10356
+
Arg
TCG
[ENA]
¢þ
>WENV180786705
ODIS01000069
[ODIS] human metagenome; G_DNA_Supragingival plaque
44099
44025
-
Arg
TCG
[ENA]
¢þ
>WENV180786788
ODIS01000224
[ODIS] human metagenome; G_DNA_Supragingival plaque
4711
4635
-
Arg
TCG
[ENA]
¢þ
>WENV180788703
ODIS01099926
[ODIS] human metagenome; G_DNA_Supragingival plaque
641
567
-
Arg
TCG
[ENA]
¢þ
>WENV180795726
ODJB01000181
[ODJB] human metagenome; G_DNA_Supragingival plaque
19744
19818
+
Arg
TCG
[ENA]
¢þ
>WENV180806819
ODJI01000049
[ODJI] human metagenome; G_DNA_Tongue dorsum
86112
86186
+
Arg
TCG
[ENA]
¢þ
>WENV180808557
ODJK01000196
[ODJK] human metagenome; G_DNA_Subgingival plaque
18380
18454
+
Arg
TCG
[ENA]
¢þ
>WENV180813227
ODJO01000177
[ODJO] human metagenome; G_DNA_Supragingival plaque
22389
22463
+
Arg
TCG
[ENA]
¢þ
>WENV180824776
ODJX01049196
[ODJX] human metagenome; G_DNA_Supragingival plaque
285
361
+
Arg
TCG
[ENA]
¢þ
>WENV180831734
ODKC01000056
[ODKC] human metagenome; G_DNA_Supragingival plaque
71263
71189
-
Arg
TCG
[ENA]
¢þ
>WENV180832276
ODKC01000936
[ODKC] human metagenome; G_DNA_Supragingival plaque
78
4
-
Arg
TCG
[ENA]
¢þ
>WENV180834827
ODKE01000025
[ODKE] human metagenome; G_DNA_Supragingival plaque
42901
42827
-
Arg
TCG
[ENA]
¢þ
>WENV180845446
ODKT01000428
[ODKT] human metagenome; G_DNA_Supragingival plaque
28179
28255
+
Arg
TCG
[ENA]
¢þ
>WENV180846378
ODKT01009856
[ODKT] human metagenome; G_DNA_Supragingival plaque
3466
3540
+
Arg
TCG
[ENA]
¢þ
>WENV180859885
ODLD01007059
[ODLD] human metagenome; G_DNA_Supragingival plaque
3534
3608
+
Arg
TCG
[ENA]
¢þ
>WENV180861128
ODLE01000982
[ODLE] human metagenome; G_DNA_Tongue dorsum
5974
5900
-
Arg
TCG
[ENA]
¢þ
>WENV180881620
ODMA01012058
[ODMA] human metagenome; G_DNA_Supragingival plaque
391
317
-
Arg
TCG
[ENA]
¢þ
>WENV180888345
ODMN01000534
[ODMN] human metagenome; G_DNA_Supragingival plaque
21365
21439
+
Arg
TCG
[ENA]
¢þ
>WENV180889072
ODMN01011488
[ODMN] human metagenome; G_DNA_Supragingival plaque
111
37
-
Arg
TCG
[ENA]
¢þ
>WENV180891979
ODMQ01079119
[ODMQ] human metagenome; G_DNA_Supragingival plaque
64
140
+
Arg
TCG
[ENA]
¢þ
>WENV180924270
ODTK01002421
[ODTK] human metagenome; G_DNA_Supragingival plaque
4034
4110
+
Arg
TCG
[ENA]
¢þ
>WENV180931708
ODTP01008455
[ODTP] human metagenome; G_DNA_Tongue dorsum
1683
1757
+
Arg
TCG
[ENA]
¢þ
>WENV180935140
ODTS01072358
[ODTS] human metagenome; G_DNA_Subgingival plaque
230
304
+
Arg
TCG
[ENA]
¢þ
>WENV180937944
ODTX01000260
[ODTX] human metagenome; G_DNA_Supragingival plaque
21819
21893
+
Arg
TCG
[ENA]
¢þ
>WENV180943405
ODUC01000403
[ODUC] human metagenome; G_DNA_Supragingival plaque
23913
23989
+
Arg
TCG
[ENA]
¢þ
>WENV180944779
ODUC01034691
[ODUC] human metagenome; G_DNA_Supragingival plaque
1549
1475
-
Arg
TCG
[ENA]
¢þ
>WENV180948015
ODUG01000181
[ODUG] human metagenome; G_DNA_Tongue dorsum
30241
30167
-
Arg
TCG
[ENA]
¢þ
>WENV180948214
ODUG01000468
[ODUG] human metagenome; G_DNA_Tongue dorsum
11621
11695
+
Arg
TCG
[ENA]
¢þ
>WENV180950681
ODUH01000731
[ODUH] human metagenome; G_DNA_Subgingival plaque
6167
6241
+
Arg
TCG
[ENA]
¢þ
>WENV180955422
ODUJ01119723
[ODUJ] human metagenome; G_DNA_Tongue dorsum
143
69
-
Arg
TCG
[ENA]
¢þ
>WENV180980682
ODVE01001080
[ODVE] human metagenome; G_DNA_Supragingival plaque
4302
4228
-
Arg
TCG
[ENA]
¢þ
>WENV180982632
ODVF01000169
[ODVF] human metagenome; G_DNA_Supragingival plaque
25498
25424
-
Arg
TCG
[ENA]
¢þ
>WENV180986565
ODVK01000090
[ODVK] human metagenome; G_DNA_Supragingival plaque
8954
8878
-
Arg
TCG
[ENA]
¢þ
>WENV180986697
ODVK01000435
[ODVK] human metagenome; G_DNA_Supragingival plaque
1948
1874
-
Arg
TCG
[ENA]
¢þ
>WENV180990266
ODVN01000721
[ODVN] human metagenome; G_DNA_Tongue dorsum
24163
24089
-
Arg
TCG
[ENA]
¢þ
>WENV180998601
ODVT01000885
[ODVT] human metagenome; G_DNA_Buccal mucosa
510
436
-
Arg
TCG
[ENA]
¢þ
>WENV181002473
ODVX01000459
[ODVX] human metagenome; G_DNA_Supragingival plaque
3805
3729
-
Arg
TCG
[ENA]
¢þ
>WENV181003437
ODVX01012497
[ODVX] human metagenome; G_DNA_Supragingival plaque
741
667
-
Arg
TCG
[ENA]
¢þ
>WENV181004309
ODVX01235902
[ODVX] human metagenome; G_DNA_Supragingival plaque
4
78
+
Arg
TCG
[ENA]
¢þ
>WENV181007487
ODWE01000134
[ODWE] human metagenome; G_DNA_Supragingival plaque
47502
47576
+
Arg
TCG
[ENA]
¢þ
>WENV181007897
ODWE01001039
[ODWE] human metagenome; G_DNA_Supragingival plaque
19913
19987
+
Arg
TCG
[ENA]
¢þ
>WENV181008796
ODWE01014151
[ODWE] human metagenome; G_DNA_Supragingival plaque
2600
2674
+
Arg
TCG
[ENA]
¢þ
>WENV181049428
ODYD01000179
[ODYD] human metagenome; G_DNA_Supragingival plaque
28196
28272
+
Arg
TCG
[ENA]
¢þ
>WENV181067132
ODZI01007466
[ODZI] human metagenome; G_DNA_Supragingival plaque
3339
3413
+
Arg
TCG
[ENA]
¢þ
>WENV181075681
OEAP01000141
[OEAP] human metagenome; G_DNA_Supragingival plaque
24946
24872
-
Arg
TCG
[ENA]
¢þ
>WENV181076263
OEAP01003088
[OEAP] human metagenome; G_DNA_Supragingival plaque
5234
5160
-
Arg
TCG
[ENA]
¢þ
>WENV181079461
OEAS01006999
[OEAS] human metagenome; G_DNA_Supragingival plaque
288
214
-
Arg
TCG
[ENA]
¢þ
>WENV181082675
OEAV01000252
[OEAV] human metagenome; G_DNA_Supragingival plaque
5181
5105
-
Arg
TCG
[ENA]
¢þ
>WENV181082886
OEAV01001067
[OEAV] human metagenome; G_DNA_Supragingival plaque
9718
9644
-
Arg
TCG
[ENA]
¢þ
>WENV181083901
OEAV01032343
[OEAV] human metagenome; G_DNA_Supragingival plaque
646
572
-
Arg
TCG
[ENA]
¢þ
>WENV181084676
OEAX01000014
[OEAX] human metagenome; G_DNA_Tongue dorsum
11889
11963
+
Arg
TCG
[ENA]
¢þ
>WENV181106732
OEEI01000089
[OEEI] human metagenome; G_DNA_Supragingival plaque
25482
25556
+
Arg
TCG
[ENA]
¢þ
>WENV181106859
OEEI01000469
[OEEI] human metagenome; G_DNA_Supragingival plaque
16471
16545
+
Arg
TCG
[ENA]
¢þ
>WENV181123649
OEFQ01000206
[OEFQ] human metagenome; G_DNA_Supragingival plaque
23128
23204
+
Arg
TCG
[ENA]
¢þ
>WENV181130461
OEFY01013776
[OEFY] human metagenome; G_DNA_Throat
92
18
-
Arg
TCG
[ENA]
¢þ
>WENV181137297
OEGJ01001495
[OEGJ] human metagenome; G_DNA_Supragingival plaque
5372
5446
+
Arg
TCG
[ENA]
¢þ
>WENV181138007
OEGJ01070899
[OEGJ] human metagenome; G_DNA_Supragingival plaque
4
78
+
Arg
TCG
[ENA]
¢þ
>WENV181140613
OEGT01000011
[OEGT] human metagenome; G_DNA_Throat
147192
147118
-
Arg
TCG
[ENA]
¢þ
>WENV181150226
OEHW01001067
[OEHW] human metagenome; G_DNA_Tongue dorsum
3740
3666
-
Arg
TCG
[ENA]
¢þ
>WENV181152220
OEIA01000419
[OEIA] human metagenome; G_DNA_Supragingival plaque
7116
7190
+
Arg
TCG
[ENA]
¢þ
>WENV181155782
OEIE01000055
[OEIE] human metagenome; G_DNA_Supragingival plaque
33659
33735
+
Arg
TCG
[ENA]
¢þ
>WENV181155850
OEIE01000277
[OEIE] human metagenome; G_DNA_Supragingival plaque
18116
18190
+
Arg
TCG
[ENA]
¢þ
>WENV181161169
OEIK01195239
[OEIK] human metagenome; G_DNA_Supragingival plaque
124
198
+
Arg
TCG
[ENA]
¢þ
>WENV181177441
OEJS01002016
[OEJS] human metagenome; G_DNA_Supragingival plaque
566
640
+
Arg
TCG
[ENA]
¢þ
>WENV181178796
OEJT01000279
[OEJT] human metagenome; G_DNA_Supragingival plaque
24856
24782
-
Arg
TCG
[ENA]
¢þ
>WENV181180585
OEJU01000294
[OEJU] human metagenome; G_DNA_Supragingival plaque
28247
28323
+
Arg
TCG
[ENA]
¢þ
>WENV181180691
OEJU01000650
[OEJU] human metagenome; G_DNA_Supragingival plaque
7203
7129
-
Arg
TCG
[ENA]
¢þ
>W141143705
AWSR01000022
Bacteroidota
Capnocytophaga sp. oral taxon 863 oral taxon 863 str. F0517 [AWSR]
41556
41632
+
Arg
TCG
[ENA]
¡û
>WENV183511030
OMHV01001989
[OMHV] human oral metagenome; human oral
368
442
+
Arg
TCG
[ENA]
¢þ
>C181063471
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
1705915
1705989
+
Arg
TCG
-
¡û
>C181063673
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
2190945
2190871
-
Arg
TCG
-
¡û
>C181063886
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
1012889
1012963
+
Arg
TCG
-
¡û
>C181063936
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
2208329
2208403
+
Arg
TCG
-
¡û
>C181063989
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
2202435
2202361
-
Arg
TCG
-
¡û
>C191093555
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
2548175
2548101
-
Arg
TCG
-
¡û
>C191213479
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
2232852
2232926
+
Arg
TCG
-
¡û
>W1810101903
PGTV01000004
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
37709
37635
-
Arg
TCG
[ENA]
¡û
>W1510076133
CDOD01000001
Bacteroidota
Capnocytophaga cynodegmi Ccyn2B [CDOD]
86484
86408
-
Arg
TCG
[ENA]
¡û
>W1510076199
CDOE01000075
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
23463
23387
-
Arg
TCG
[ENA]
¡û
>W1510076232
CDOF01000068
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
5925
6001
+
Arg
TCG
[ENA]
¡û
>W1510076251
CDOG01000001
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
2274
2350
+
Arg
TCG
[ENA]
¡û
>W1510076382
CDOJ01000073
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
1523
1447
-
Arg
TCG
[ENA]
¡û
>W1510076410
CDOK01000070
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
1668
1592
-
Arg
TCG
[ENA]
¡û
>C11104970
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
600279
600355
+
Arg
TCG
[Ensembl]
¡û
>W11152326
AEXX01000001
Bacteroidota
Capnocytophaga sp. oral taxon 338 oral taxon 338 str. F0234 [AEXX]
26069
26145
+
Arg
TCG
[ENA]
¡û
>W121112682
ALNN01000011
Bacteroidota
Capnocytophaga sp. CM59 [ALNN]
25934
26010
+
Arg
TCG
[ENA]
¡û
>W1710528344
FNND01000001
Bacteroidota
Capnocytophaga granulosa [FNND]
368674
368598
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK