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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.187637 (86 seq.)
>W1711185404
LWNI01000118
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
10453
10529
+
Gln
CTG
[ENA]
¡û
>W141042672
AMER01000134
Betaproteobacteria
Neisseria sp. oral taxon 020 oral taxon 020 str. F0370 [AMER]
3753
3677
-
Gln
CTG
[ENA]
¡û
>WENV180697364
ODDE01000091
[ODDE] human metagenome; G_DNA_Supragingival plaque
2724
2800
+
Gln
CTG
[ENA]
¢þ
>WENV180720816
ODGJ01184470
[ODGJ] human metagenome; G_DNA_Tongue dorsum
12
88
+
Gln
CTG
[ENA]
¢þ
>WENV180727158
ODGU01002637
[ODGU] human metagenome; G_DNA_Supragingival plaque
8881
8957
+
Gln
CTG
[ENA]
¢þ
>WENV180732047
ODGW01086601
[ODGW] human metagenome; G_DNA_Supragingival plaque
100
24
-
Gln
CTG
[ENA]
¢þ
>WENV180733223
ODGY01061592
[ODGY] human metagenome; G_DNA_Supragingival plaque
35
111
+
Gln
CTG
[ENA]
¢þ
>WENV180734599
ODGZ01014260
[ODGZ] human metagenome; G_DNA_Supragingival plaque
70
146
+
Gln
CTG
[ENA]
¢þ
>WENV180736039
ODHB01003504
[ODHB] human metagenome; G_DNA_Supragingival plaque
1884
1808
-
Gln
CTG
[ENA]
¢þ
>WENV180738685
ODHD01000274
[ODHD] human metagenome; G_DNA_Supragingival plaque
39682
39606
-
Gln
CTG
[ENA]
¢þ
>WENV180750705
ODHS01006113
[ODHS] human metagenome; G_DNA_Supragingival plaque
1426
1350
-
Gln
CTG
[ENA]
¢þ
>WENV180755200
ODHU01034193
[ODHU] human metagenome; G_DNA_Supragingival plaque
547
471
-
Gln
CTG
[ENA]
¢þ
>WENV180759697
ODHY01082455
[ODHY] human metagenome; G_DNA_Buccal mucosa
269
193
-
Gln
CTG
[ENA]
¢þ
>WENV180778313
ODIM01003235
[ODIM] human metagenome; G_DNA_Supragingival plaque
161
237
+
Gln
CTG
[ENA]
¢þ
>WENV180787538
ODIS01008012
[ODIS] human metagenome; G_DNA_Supragingival plaque
2242
2166
-
Gln
CTG
[ENA]
¢þ
>WENV180795913
ODJB01000561
[ODJB] human metagenome; G_DNA_Supragingival plaque
18710
18786
+
Gln
CTG
[ENA]
¢þ
>WENV180796960
ODJB01021695
[ODJB] human metagenome; G_DNA_Supragingival plaque
303
227
-
Gln
CTG
[ENA]
¢þ
>WENV180801291
ODJD01018796
[ODJD] human metagenome; G_DNA_Supragingival plaque
632
708
+
Gln
CTG
[ENA]
¢þ
>WENV180804443
ODJG01002934
[ODJG] human metagenome; G_DNA_Supragingival plaque
4966
5042
+
Gln
CTG
[ENA]
¢þ
>WENV180814335
ODJO01013608
[ODJO] human metagenome; G_DNA_Supragingival plaque
647
571
-
Gln
CTG
[ENA]
¢þ
>WENV180824643
ODJX01023481
[ODJX] human metagenome; G_DNA_Supragingival plaque
22
98
+
Gln
CTG
[ENA]
¢þ
>WENV180833124
ODKC01014992
[ODKC] human metagenome; G_DNA_Supragingival plaque
1910
1834
-
Gln
CTG
[ENA]
¢þ
>WENV180833868
ODKD01000553
[ODKD] human metagenome; G_DNA_Supragingival plaque
2373
2449
+
Gln
CTG
[ENA]
¢þ
>WENV180846924
ODKT01029596
[ODKT] human metagenome; G_DNA_Supragingival plaque
77
1
-
Gln
CTG
[ENA]
¢þ
>WENV180860071
ODLD01016065
[ODLD] human metagenome; G_DNA_Supragingival plaque
1733
1657
-
Gln
CTG
[ENA]
¢þ
>WENV180881158
ODLZ01192470
[ODLZ] human metagenome; G_DNA_Tongue dorsum
120
44
-
Gln
CTG
[ENA]
¢þ
>WENV180881719
ODMA01053119
[ODMA] human metagenome; G_DNA_Supragingival plaque
120
44
-
Gln
CTG
[ENA]
¢þ
>WENV180887617
ODMI01032507
[ODMI] human metagenome; G_DNA_Buccal mucosa
106
182
+
Gln
CTG
[ENA]
¢þ
>WENV180888915
ODMN01005954
[ODMN] human metagenome; G_DNA_Supragingival plaque
1885
1809
-
Gln
CTG
[ENA]
¢þ
>WENV180891810
ODMQ01016373
[ODMQ] human metagenome; G_DNA_Supragingival plaque
159
235
+
Gln
CTG
[ENA]
¢þ
>WENV180922133
ODTJ01001484
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2601
2677
+
Gln
CTG
[ENA]
¢þ
>WENV180922606
ODTJ01006740
[ODTJ] human metagenome; G_DNA_Supragingival plaque
183
259
+
Gln
CTG
[ENA]
¢þ
>WENV180927688
ODTM01002511
[ODTM] human metagenome; G_DNA_Supragingival plaque
22
98
+
Gln
CTG
[ENA]
¢þ
>WENV180933508
ODTR01000349
[ODTR] human metagenome; G_DNA_Supragingival plaque
21658
21582
-
Gln
CTG
[ENA]
¢þ
>WENV180939195
ODTX01019886
[ODTX] human metagenome; G_DNA_Supragingival plaque
1911
1835
-
Gln
CTG
[ENA]
¢þ
>WENV180944266
ODUC01011915
[ODUC] human metagenome; G_DNA_Supragingival plaque
1859
1783
-
Gln
CTG
[ENA]
¢þ
>WENV180958071
ODUL01000270
[ODUL] human metagenome; G_DNA_Supragingival plaque
8788
8864
+
Gln
CTG
[ENA]
¢þ
>WENV180972844
ODUW01000312
[ODUW] human metagenome; G_DNA_Supragingival plaque
12374
12298
-
Gln
CTG
[ENA]
¢þ
>WENV180980666
ODVE01000988
[ODVE] human metagenome; G_DNA_Supragingival plaque
4393
4469
+
Gln
CTG
[ENA]
¢þ
>WENV180983284
ODVF01006716
[ODVF] human metagenome; G_DNA_Supragingival plaque
2344
2420
+
Gln
CTG
[ENA]
¢þ
>WENV180986772
ODVK01000745
[ODVK] human metagenome; G_DNA_Supragingival plaque
13064
12988
-
Gln
CTG
[ENA]
¢þ
>WENV180999218
ODVT01009310
[ODVT] human metagenome; G_DNA_Buccal mucosa
889
965
+
Gln
CTG
[ENA]
¢þ
>WENV181003047
ODVX01004071
[ODVX] human metagenome; G_DNA_Supragingival plaque
2837
2913
+
Gln
CTG
[ENA]
¢þ
>WENV181008965
ODWE01021559
[ODWE] human metagenome; G_DNA_Supragingival plaque
3
79
+
Gln
CTG
[ENA]
¢þ
>WENV181019108
ODWU01000631
[ODWU] human metagenome; G_DNA_Supragingival plaque
13165
13241
+
Gln
CTG
[ENA]
¢þ
>WENV181029860
ODXF01007072
[ODXF] human metagenome; G_DNA_Supragingival plaque
61
137
+
Gln
CTG
[ENA]
¢þ
>WENV181064689
ODYP01071484
[ODYP] human metagenome; G_DNA_Supragingival plaque
161
237
+
Gln
CTG
[ENA]
¢þ
>WENV181066988
ODZI01004402
[ODZI] human metagenome; G_DNA_Supragingival plaque
2924
3000
+
Gln
CTG
[ENA]
¢þ
>WENV181070235
OEAE01000496
[OEAE] human metagenome; G_DNA_Supragingival plaque
2844
2920
+
Gln
CTG
[ENA]
¢þ
>WENV181076415
OEAP01004977
[OEAP] human metagenome; G_DNA_Supragingival plaque
4158
4234
+
Gln
CTG
[ENA]
¢þ
>WENV181080759
OEAS01077984
[OEAS] human metagenome; G_DNA_Supragingival plaque
183
259
+
Gln
CTG
[ENA]
¢þ
>WENV181080801
OEAS01083326
[OEAS] human metagenome; G_DNA_Supragingival plaque
183
259
+
Gln
CTG
[ENA]
¢þ
>WENV181083028
OEAV01001847
[OEAV] human metagenome; G_DNA_Supragingival plaque
7116
7040
-
Gln
CTG
[ENA]
¢þ
>WENV181087631
OEAY01095494
[OEAY] human metagenome; G_DNA_Tongue dorsum
218
142
-
Gln
CTG
[ENA]
¢þ
>WENV181090512
OEBC01000867
[OEBC] human metagenome; G_DNA_Supragingival plaque
2552
2628
+
Gln
CTG
[ENA]
¢þ
>WENV181108082
OEEI01080792
[OEEI] human metagenome; G_DNA_Supragingival plaque
368
292
-
Gln
CTG
[ENA]
¢þ
>WENV181123717
OEFQ01000512
[OEFQ] human metagenome; G_DNA_Supragingival plaque
2918
2994
+
Gln
CTG
[ENA]
¢þ
>WENV181137736
OEGJ01018526
[OEGJ] human metagenome; G_DNA_Supragingival plaque
37
113
+
Gln
CTG
[ENA]
¢þ
>WENV181143189
OEHM01000204
[OEHM] human metagenome; G_DNA_Supragingival plaque
23773
23849
+
Gln
CTG
[ENA]
¢þ
>WENV181146182
OEHQ01001592
[OEHQ] human metagenome; G_DNA_Supragingival plaque
3708
3784
+
Gln
CTG
[ENA]
¢þ
>WENV181152473
OEIA01001677
[OEIA] human metagenome; G_DNA_Supragingival plaque
7557
7481
-
Gln
CTG
[ENA]
¢þ
>WENV181155903
OEIE01000633
[OEIE] human metagenome; G_DNA_Supragingival plaque
10304
10228
-
Gln
CTG
[ENA]
¢þ
>WENV181158577
OEIH01003160
[OEIH] human metagenome; G_DNA_Supragingival plaque
2655
2731
+
Gln
CTG
[ENA]
¢þ
>WENV181177936
OEJS01031436
[OEJS] human metagenome; G_DNA_Supragingival plaque
231
307
+
Gln
CTG
[ENA]
¢þ
>WENV181179287
OEJT01002769
[OEJT] human metagenome; G_DNA_Supragingival plaque
7262
7186
-
Gln
CTG
[ENA]
¢þ
>WENV181180529
OEJU01000172
[OEJU] human metagenome; G_DNA_Supragingival plaque
2927
3003
+
Gln
CTG
[ENA]
¢þ
>WENV181181920
OEJV01000675
[OEJV] human metagenome; G_DNA_Supragingival plaque
2838
2914
+
Gln
CTG
[ENA]
¢þ
>C181198221
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
202677
202753
+
Gln
TTG
-
¡û
>C181198222
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
202768
202844
+
Gln
CTG
-
¡û
>C181198439
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
1741507
1741431
-
Gln
CTG
-
¡û
>C181213201
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
1926765
1926689
-
Gln
CTG
-
¡û
>W1810227376
POXH01000008
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
33140
33216
+
Gln
CTG
[ENA]
¡û
>W1810227456
POXJ01000002
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
199525
199449
-
Gln
CTG
[ENA]
¡û
>W1810227922
POXS01000002
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
152948
153024
+
Gln
CTG
[ENA]
¡û
>W1810228109
POXV01000017
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
29560
29484
-
Gln
CTG
[ENA]
¡û
>W1810228231
POXY01000001
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
182973
183049
+
Gln
CTG
[ENA]
¡û
>C151033132
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
1500157
1500081
-
Gln
CTG
[Ensembl]
¡û
>W10109802
ADBF01000030
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
91248
91172
-
Gln
CTG
[ENA]
¡û
>W11112189
ADBF01000030
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
91248
91172
-
Gln
CTG
[ENA]
¡û
>W1511439632
JUOC01000027
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
62122
62198
+
Gln
CTG
[ENA]
¡û
>W1511456091
JVHH01000066
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
259468
259392
-
Gln
CTG
[ENA]
¡û
>W1511457698
JVIM01000070
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
32047
32123
+
Gln
CTG
[ENA]
¡û
>W1511464657
JVQC01000021
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
16486
16410
-
Gln
CTG
[ENA]
¡û
>W1511469709
JVVT01000108
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
154347
154271
-
Gln
CTG
[ENA]
¡û
>W11156205
AFAY01000029
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
91224
91300
+
Gln
CTG
[ENA]
¡û
>W1710563498
FOPS01000004
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
81344
81420
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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