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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188307 (13 seq.)
>WENV170985319
MWVW01066951
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
434
358
-
Ile
GAT
[ENA]
¢þ
>C191124937
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
480391
480467
+
Ile
GAT
-
¡û
>C191124955
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
3210070
3210146
+
Ile
GAT
-
¡û
>C191124978
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
2099986
2099910
-
Ile
GAT
-
¡û
>W1810068085
PDZG01000173
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
829
753
-
Ile
GAT
[ENA]
¡û
>W1511552261
JZUG01000035
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
672
596
-
Ile
GAT
[ENA]
¡û
>W1511552263
JZUG01000038
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
499
423
-
Ile
GAT
[ENA]
¡û
>C161068530
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
115591
115667
+
Ile
GAT
[Ensembl]
¡û
>C161068539
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
415935
416011
+
Ile
GAT
[Ensembl]
¡û
>C161068544
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
894575
894651
+
Ile
GAT
[Ensembl]
¡û
>C161068576
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
3196453
3196377
-
Ile
GAT
[Ensembl]
¡û
>W1610576346
LAQT01000020
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
3702
3626
-
Ile
GAT
[ENA]
¡û
>W1710694835
LAQT01000020
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
3702
3626
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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