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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188358 (36 seq.)
>W1710900549
LNKA01000019
Gammaproteobacteria
Legionella adelaidensis [LNKA]
81385
81309
-
Met
CAT
[ENA]
¡û
>W1710919942
LNYC01000006
Gammaproteobacteria
Legionella geestiana [LNYC]
51864
51788
-
Met
CAT
[ENA]
¡û
>W1710920225
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2311578
2311654
+
Met
CAT
[ENA]
¡û
>W1710920343
LNYM01000007
Gammaproteobacteria
Legionella micdadei [LNYM]
95292
95216
-
Met
CAT
[ENA]
¡û
>W1710996757
LQBR01000004
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
135030
134954
-
Met
CAT
[ENA]
¡û
>W1711029546
LRFG01000004
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
135030
134954
-
Met
CAT
[ENA]
¡û
>W1711268628
LZDE01000155
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
1
77
+
Met
CAT
[ENA]
¡û
>W1711413879
MGXG01000002
Gammaproteobacteria
Gammaproteobacteria bacterium GWE2_37_16 [MGXG]
2355
2431
+
Met
CAT
[ENA]
¡û
>C171110800
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
246304
246380
+
Met
CAT
-
¡û
>WENV181206570
OFAW01000184
[OFAW] metagenome; hydrothermal vent
8951
9027
+
fMet
CAT
[ENA]
¢þ
>WENV182543160
OJBA01001227
[OJBA] seawater metagenome; Sea water
2636
2560
-
fMet
CAT
[ENA]
¢þ
>WENV182547329
OJBS01000380
[OJBS] seawater metagenome; Sea water
5770
5846
+
fMet
CAT
[ENA]
¢þ
>WENV182569385
OJEZ01000038
[OJEZ] seawater metagenome; Sea water
16427
16503
+
fMet
CAT
[ENA]
¢þ
>WENV183058746
OLHR01007579
[OLHR] seawater metagenome; Sea water
77
1
-
fMet
CAT
[ENA]
¢þ
>WENV183807828
PVBE011236976
[PVBE] marine metagenome; water
2655
2579
-
fMet
CAT
[ENA]
¢þ
>WENV170285016
CERV01113975
[CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
296
372
+
Met
CAT
[ENA]
¢þ
>WENV170571475
FLOH01000169
[FLOH] marine metagenome; water
8734
8658
-
Met
CAT
[ENA]
¢þ
>C191158510
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
412296
412372
+
Met
CAT
-
¡û
>C191209325
LR134374
Gammaproteobacteria
Legionella spiritensis NCTC12082 [LR134374]
2026426
2026350
-
Met
CAT
-
¡û
>W09134564
ACUL01000026
Gammaproteobacteria
Legionella drancourtii LLAP12 [ACUL]
2864
2940
+
Met
CAT
[ENA]
¡û
>W1911662350
QFGJ01000005
Gammaproteobacteria
Legionella taurinensis WC03 [QFGJ]
132989
132913
-
Met
CAT
[ENA]
¡û
>W1911662403
QFGK01000006
Gammaproteobacteria
Legionella taurinensis WC02 [QFGK]
132989
132913
-
Met
CAT
[ENA]
¡û
>W1911662442
QFGL01000005
Gammaproteobacteria
Legionella taurinensis WC01 [QFGL]
132989
132913
-
Met
CAT
[ENA]
¡û
>W1810531355
QCXK01000006
Gammaproteobacteria
Legionella taurinensis Genessee01 [QCXK]
132859
132783
-
Met
CAT
[ENA]
¡û
>C151103424
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
246870
246946
+
Met
CAT
[Ensembl]
¡û
>C151103875
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
3131239
3131163
-
Met
CAT
[Ensembl]
¡û
>W1610760536
LNKA01000019
Gammaproteobacteria
Legionella adelaidensis [LNKA]
81385
81309
-
Met
CAT
[ENA]
¡û
>W1610777840
LNYC01000006
Gammaproteobacteria
Legionella geestiana [LNYC]
51864
51788
-
Met
CAT
[ENA]
¡û
>W1610778123
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2311578
2311654
+
Met
CAT
[ENA]
¡û
>W1610778241
LNYM01000007
Gammaproteobacteria
Legionella micdadei [LNYM]
95292
95216
-
Met
CAT
[ENA]
¡û
>W1610851414
LQBR01000004
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
135030
134954
-
Met
CAT
[ENA]
¡û
>W1610877814
LRFG01000004
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
135030
134954
-
Met
CAT
[ENA]
¡û
>W1710532727
FNQO01000001
Gammaproteobacteria
Microbulbifer marinus [FNQO]
1757609
1757533
-
Met
CAT
[ENA]
¡û
>W1710532728
FNQO01000001
Gammaproteobacteria
Microbulbifer marinus [FNQO]
1703588
1703512
-
Met
CAT
[ENA]
¡û
>W1710557180
FOKT01000001
Gammaproteobacteria
Microbulbifer thermotolerans [FOKT]
5077
5153
+
Met
CAT
[ENA]
¡û
>W1710568973
FOTZ01000009
Gammaproteobacteria
Legionella jamestowniensis DSM 19215 [FOTZ]
39927
39851
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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