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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188521 (143 seq.)
>W1710785448
LJHW01000009
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
59092
59016
-
Pro
GGG
[ENA]
¡û
>W1711148460
LVKM01000080
Betaproteobacteria
Achromobacter ruhlandii [LVKM]
46133
46057
-
Pro
GGG
[ENA]
¡û
>W1711254571
LYQL01000567
Betaproteobacteria
Achromobacter xylosoxidans [LYQL]
82533
82457
-
Pro
GGG
[ENA]
¡û
>W1711504149
MKUH01000001
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
186551
186475
-
Pro
GGG
[ENA]
¡û
>W1712110613
NJIY01000004
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
315051
314975
-
Pro
GGG
[ENA]
¡û
>C171007797
CP011167
Betaproteobacteria
Bordetella pertussis C571 [CP011167]
2690574
2690498
-
Pro
GGG
-
¡û
>C171008774
CP011188
Betaproteobacteria
Bordetella pertussis H707 [CP011188]
1364981
1365057
+
Pro
GGG
-
¡û
>C171012727
CP011722
Betaproteobacteria
Bordetella pertussis I135 [CP011722]
2691609
2691533
-
Pro
GGG
-
¡û
>C171013257
CP011733
Betaproteobacteria
Bordetella pertussis I350 [CP011733]
1333856
1333932
+
Pro
GGG
-
¡û
>C171013953
CP011747
Betaproteobacteria
Bordetella pertussis I965 [CP011747]
1385864
1385940
+
Pro
GGG
-
¡û
>C171014757
CP011763
Betaproteobacteria
Bordetella pertussis J090 [CP011763]
1333853
1333929
+
Pro
GGG
-
¡û
>C171020109
CP013081
Betaproteobacteria
Bordetella pertussis E602 [CP013081]
2692653
2692577
-
Pro
GGG
-
¡û
>C171020307
CP013085
Betaproteobacteria
Bordetella pertussis H706 [CP013085]
2688191
2688115
-
Pro
GGG
-
¡û
>C171041056
CP015762
Betaproteobacteria
Bordetella pertussis VA-150 [CP015762]
2698788
2698712
-
Pro
GGG
-
¡û
>C171041457
CP015770
Betaproteobacteria
Bordetella pertussis VA-010 [CP015770]
2962788
2962712
-
Pro
GGG
-
¡û
>C171061971
CP017404
Betaproteobacteria
Bordetella pertussis J447 [CP017404]
2840494
2840418
-
Pro
GGG
-
¡û
>C171101613
CP019957
Betaproteobacteria
Bordetella pertussis Pelita III [CP019957]
2738592
2738516
-
Pro
GGG
-
¡û
>C171115852
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
2815246
2815170
-
Pro
GGG
-
¡û
>C171115895
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
3217016
3216940
-
Pro
GGG
-
¡û
>W131159954
AQWB01000002
Betaproteobacteria
Rhodocyclus sp. UW 659-1-F08 [AQWB]
23976
23900
-
Pro
GGG
[ENA]
¡û
>W131166891
ARCV01000001
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
348699
348775
+
Pro
GGG
[ENA]
¡û
>W131230534
AUHR01000015
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
19375
19451
+
Pro
GGG
[ENA]
¡û
>WENV180016503
FSVG01001149
[FSVG] metagenome; soil
33488
33412
-
Pro
GGG
[ENA]
¢þ
>WENV180130561
OATG01000362
[OATG] human gut metagenome; faeces
44838
44914
+
Pro
GGG
[ENA]
¢þ
>WENV180130781
OATG01000950
[OATG] human gut metagenome; faeces
10662
10738
+
Pro
GGG
[ENA]
¢þ
>WENV180195757
OAZZ01000612
[OAZZ] human gut metagenome; faeces
10915
10991
+
Pro
GGG
[ENA]
¢þ
>WENV180220720
OBAW01002430
[OBAW] human gut metagenome; human gut
923
847
-
Pro
GGG
[ENA]
¢þ
>WENV180296811
OBJA01003058
[OBJA] soil metagenome; sediment, water from around vicinity
2515
2591
+
Pro
GGG
[ENA]
¢þ
>WENV180333432
OBLF01000797
[OBLF] metagenome; feces
2578
2654
+
Pro
GGG
[ENA]
¢þ
>WENV180423086
OBVV01009040
[OBVV] human gut metagenome; faeces
549
473
-
Pro
GGG
[ENA]
¢þ
>WENV180425940
OBVY01003149
[OBVY] human gut metagenome; faeces
604
680
+
Pro
GGG
[ENA]
¢þ
>WENV180451050
OBXI01001228
[OBXI] human gut metagenome; faeces
15517
15593
+
Pro
GGG
[ENA]
¢þ
>WENV180460692
OBXZ01000843
[OBXZ] human gut metagenome; faeces
11905
11981
+
Pro
GGG
[ENA]
¢þ
>WENV180507999
OCAT01015344
[OCAT] human gut metagenome; faeces
316
392
+
Pro
GGG
[ENA]
¢þ
>WENV180526693
OCHI01050879
[OCHI] human gut metagenome; human gut
514
590
+
Pro
GGG
[ENA]
¢þ
>WENV180575111
OCLX01085710
[OCLX] human gut metagenome; human gut
191
115
-
Pro
GGG
[ENA]
¢þ
>WENV180578660
OCMC01000382
[OCMC] human gut metagenome; human gut
6267
6343
+
Pro
GGG
[ENA]
¢þ
>WENV180607655
OCPU01002114
[OCPU] human gut metagenome; human gut
1463
1539
+
Pro
GGG
[ENA]
¢þ
>WENV180609420
OCPV01001701
[OCPV] human gut metagenome; human gut
8002
7926
-
Pro
GGG
[ENA]
¢þ
>WENV180713395
ODFV01001353
[ODFV] human metagenome; G_DNA_Stool
1036
960
-
Pro
GGG
[ENA]
¢þ
>WENV180715807
ODFW01050554
[ODFW] human metagenome; G_DNA_Stool
421
345
-
Pro
GGG
[ENA]
¢þ
>WENV180935480
ODTU01000100
[ODTU] human metagenome; G_DNA_Stool
35355
35431
+
Pro
GGG
[ENA]
¢þ
>WENV180963556
ODUN01248923
[ODUN] human metagenome; G_DNA_Stool
87
163
+
Pro
GGG
[ENA]
¢þ
>WENV181048526
ODYC01004250
[ODYC] human metagenome; G_DNA_Stool
2748
2672
-
Pro
GGG
[ENA]
¢þ
>WENV181401484
OFTX01000393
[OFTX] sludge metagenome; sludge
17924
18000
+
Pro
GGG
[ENA]
¢þ
>WENV181454061
OGEC01005982
[OGEC] metagenome; Human gut stool
1962
2038
+
Pro
GGG
[ENA]
¢þ
>WENV181523658
OGHH01000427
[OGHH] metagenome; Human gut stool
29849
29925
+
Pro
GGG
[ENA]
¢þ
>WENV181544267
OGIG01000052
[OGIG] metagenome; Human gut stool
106017
105941
-
Pro
GGG
[ENA]
¢þ
>WENV181546778
OGII01000887
[OGII] metagenome; Human gut stool
3485
3409
-
Pro
GGG
[ENA]
¢þ
>WENV181573919
OGJS01000558
[OGJS] metagenome; Human gut stool
17392
17316
-
Pro
GGG
[ENA]
¢þ
>WENV181623850
OGMJ01000310
[OGMJ] metagenome; Human gut stool
16263
16339
+
Pro
GGG
[ENA]
¢þ
>WENV181645845
OGNN01038145
[OGNN] metagenome; Human gut stool
285
209
-
Pro
GGG
[ENA]
¢þ
>WENV181649083
OGNR01028348
[OGNR] metagenome; Human gut stool
510
586
+
Pro
GGG
[ENA]
¢þ
>WENV181659885
OGOF01001095
[OGOF] human gut metagenome; faeces
8785
8709
-
Pro
GGG
[ENA]
¢þ
>W141164521
AXSA02000022
Betaproteobacteria
Bordetella pertussis STO1-CHOC-0016 [AXSA]
100382
100458
+
Pro
GGG
[ENA]
¡û
>W141164586
AXSC02000015
Betaproteobacteria
Bordetella pertussis CHLA-20 [AXSC]
12506
12582
+
Pro
GGG
[ENA]
¡û
>W141165227
AXSP02000024
Betaproteobacteria
Bordetella pertussis STO1-CHLA-0011 [AXSP]
113550
113626
+
Pro
GGG
[ENA]
¡û
>WENV181693182
OGPA01004072
[OGPA] human gut metagenome; faeces
3437
3361
-
Pro
GGG
[ENA]
¢þ
>WENV181702347
OGPH01058516
[OGPH] human gut metagenome; faeces
162
86
-
Pro
GGG
[ENA]
¢þ
>WENV181729309
OGQB01003620
[OGQB] human gut metagenome; faeces
8495
8419
-
Pro
GGG
[ENA]
¢þ
>WENV181852939
OGWH01011120
[OGWH] freshwater metagenome; freshwater
328
404
+
Pro
GGG
[ENA]
¢þ
>WENV181853673
OGWI01034017
[OGWI] freshwater metagenome; freshwater
207
283
+
Pro
GGG
[ENA]
¢þ
>WENV182002733
OHBA01008344
[OHBA] human gut metagenome; feces
1366
1290
-
Pro
GGG
[ENA]
¢þ
>WENV182130020
OHKA01004841
[OHKA] human gut metagenome; feces
2076
2000
-
Pro
GGG
[ENA]
¢þ
>WENV182145335
OHKX01010106
[OHKX] human gut metagenome; feces
370
446
+
Pro
GGG
[ENA]
¢þ
>WENV182263572
OHTT01001118
[OHTT] human gut metagenome; feces
2784
2860
+
Pro
GGG
[ENA]
¢þ
>WENV182288419
OHVT01009889
[OHVT] human gut metagenome; feces
187
263
+
Pro
GGG
[ENA]
¢þ
>WENV182333113
OHZK01007688
[OHZK] human gut metagenome; feces
1676
1752
+
Pro
GGG
[ENA]
¢þ
>WENV182434511
OIIY01000416
[OIIY] human gut metagenome; human gut
4668
4592
-
Pro
GGG
[ENA]
¢þ
>WENV182445903
OIKY01013741
[OIKY] human gut metagenome; human gut
406
482
+
Pro
GGG
[ENA]
¢þ
>WENV182455982
OIMV01001745
[OIMV] human gut metagenome; human gut
920
844
-
Pro
GGG
[ENA]
¢þ
>W141244858
CAKU01000213
Betaproteobacteria
Bordetella bronchiseptica Bbr77 [CAKU]
6104
6180
+
Pro
GGG
[ENA]
¡û
>WENV182639572
OJLA01088431
[OJLA] metagenome; faeces
369
445
+
Pro
GGG
[ENA]
¢þ
>WENV182697420
OJOL01005536
[OJOL] human gut metagenome; human gut
482
558
+
Pro
GGG
[ENA]
¢þ
>WENV182750302
OJQZ01000432
[OJQZ] human gut metagenome; stool sample
34954
35030
+
Pro
GGG
[ENA]
¢þ
>WENV182755842
OJRF01004952
[OJRF] human gut metagenome; stool sample
578
654
+
Pro
GGG
[ENA]
¢þ
>WENV182974963
OKXS01010611
[OKXS] human gut metagenome; human gut
477
401
-
Pro
GGG
[ENA]
¢þ
>WENV183373624
OLXY01001508
[OLXY] human gut metagenome; feces
5585
5661
+
Pro
GGG
[ENA]
¢þ
>WENV183397470
OLZJ01034953
[OLZJ] human gut metagenome; feces
104
28
-
Pro
GGG
[ENA]
¢þ
>WENV183430194
OMBP01008200
[OMBP] human gut metagenome; feces
1657
1581
-
Pro
GGG
[ENA]
¢þ
>WENV183437442
OMCD01007799
[OMCD] human gut metagenome; feces
77
1
-
Pro
GGG
[ENA]
¢þ
>WENV183454958
OMDF01038135
[OMDF] human gut metagenome; feces
270
346
+
Pro
GGG
[ENA]
¢þ
>WENV183475294
OMEV01014215
[OMEV] human gut metagenome; feces
988
912
-
Pro
GGG
[ENA]
¢þ
>WENV183527229
ONZW01000156
[ONZW] human gut metagenome; human gut
37695
37771
+
Pro
GGG
[ENA]
¢þ
>WENV183529335
ONZZ01000410
[ONZZ] human gut metagenome; human gut
2543
2467
-
Pro
GGG
[ENA]
¢þ
>WENV183548128
OOAW01001394
[OOAW] human gut metagenome; human gut
10918
10994
+
Pro
GGG
[ENA]
¢þ
>WENV183594704
OODC01000103
[OODC] human gut metagenome; human gut
43094
43170
+
Pro
GGG
[ENA]
¢þ
>WENV170046326
CDYY01032100
[CDYY] gut metagenome; human stools
25340
25264
-
Pro
GGG
[ENA]
¢þ
>WENV170051211
CDZB01058841
[CDZB] gut metagenome; human stools
36640
36716
+
Pro
GGG
[ENA]
¢þ
>WENV170066108
CDZN01002798
[CDZN] gut metagenome; human stools
167377
167453
+
Pro
GGG
[ENA]
¢þ
>WENV170066116
CDZN01002799
[CDZN] gut metagenome; human stools
18195
18119
-
Pro
GGG
[ENA]
¢þ
>WENV170088306
CEAE01001705
[CEAE] gut metagenome; human stools
263
187
-
Pro
GGG
[ENA]
¢þ
>C181011617
CP012135
Betaproteobacteria
Bordetella pertussis J014 [CP012135]
1335937
1336013
+
Pro
GGG
-
¡û
>C181024057
CP017160
Betaproteobacteria
Bordetella pertussis J223 [CP017160]
1335866
1335942
+
Pro
GGG
-
¡û
>C181029895
CP018038
Betaproteobacteria
Bordetella pertussis J207 [CP018038]
2779734
2779658
-
Pro
GGG
-
¡û
>C181034291
CP018897
Betaproteobacteria
Bordetella parapertussis [CP018897]
2804116
2804192
+
Pro
GGG
-
¡û
>C181045557
CP020646
Betaproteobacteria
Bordetella parapertussis I440 [CP020646]
1863994
1863918
-
Pro
GGG
-
¡û
>C181045765
CP020650
Betaproteobacteria
Bordetella bronchiseptica E001 [CP020650]
3298768
3298692
-
Pro
GGG
-
¡û
>C181045855
CP020652
Betaproteobacteria
Bordetella parapertussis D577 [CP020652]
2804153
2804229
+
Pro
GGG
-
¡û
>C191029736
CP025072
Betaproteobacteria
Bordetella parapertussis B160 [CP025072]
2805758
2805834
+
Pro
GGG
-
¡û
>C191032139
CP025343
Betaproteobacteria
Bordetella pertussis J185 [CP025343]
1333851
1333927
+
Pro
GGG
-
¡û
>C191033289
CP025366
Betaproteobacteria
Bordetella pertussis F954 [CP025366]
1105239
1105315
+
Pro
GGG
-
¡û
>C191033785
CP025376
Betaproteobacteria
Bordetella pertussis I462 [CP025376]
1385861
1385937
+
Pro
GGG
-
¡û
>C191033958
CP025379
Betaproteobacteria
Bordetella pertussis I188 [CP025379]
2689442
2689366
-
Pro
GGG
-
¡û
>C191042386
CP026430
Betaproteobacteria
Bordetella pertussis J364 [CP026430]
2676543
2676467
-
Pro
GGG
-
¡û
>C191043262
CP026448
Betaproteobacteria
Bordetella pertussis J267 [CP026448]
1367067
1367143
+
Pro
GGG
-
¡û
>C191043412
CP026451
Betaproteobacteria
Bordetella pertussis J263 [CP026451]
1367067
1367143
+
Pro
GGG
-
¡û
>C191043662
CP026456
Betaproteobacteria
Bordetella pertussis J257 [CP026456]
1367068
1367144
+
Pro
GGG
-
¡û
>C191045763
CP026627
Betaproteobacteria
Bordetella pertussis J522 [CP026627]
1333854
1333930
+
Pro
GGG
-
¡û
>C191046033
CP026632
Betaproteobacteria
Bordetella pertussis J368 [CP026632]
2692656
2692580
-
Pro
GGG
-
¡û
>C191048757
CP026919
Betaproteobacteria
Bordetella pertussis J130 [CP026919]
2687390
2687314
-
Pro
GGG
-
¡û
>W141521539
JGWR01000026
Betaproteobacteria
Bordetella bronchiseptica CA90 BB1334 [JGWR]
77420
77496
+
Pro
GGG
[ENA]
¡û
>W141521621
JGWS01000081
Betaproteobacteria
Bordetella bronchiseptica CARE970018BB [JGWS]
25190
25114
-
Pro
GGG
[ENA]
¡û
>W141521869
JGWX01000104
Betaproteobacteria
Bordetella bronchiseptica E012 [JGWX]
84034
84110
+
Pro
GGG
[ENA]
¡û
>W141523123
JGXX01000075
Betaproteobacteria
Bordetella bronchiseptica MBORD901 [JGXX]
91441
91365
-
Pro
GGG
[ENA]
¡û
>W141526386
JHBT01000104
Betaproteobacteria
Bordetella bronchiseptica SBL-F6116 [JHBT]
12407
12483
+
Pro
GGG
[ENA]
¡û
>C191208856
LR134361
Betaproteobacteria
Achromobacter insolitus NCTC13520 [LR134361]
4194549
4194473
-
Pro
GGG
-
¡û
>C191211774
LR134480
Betaproteobacteria
Bordetella bronchiseptica NCTC8344 [LR134480]
2481618
2481542
-
Pro
GGG
-
¡û
>W1910128386
BHVV01000006
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
166149
166225
+
Pro
GGG
[ENA]
¡û
>W1810005503
BFBP01000011
Betaproteobacteria
Azospira sp. I13 [BFBP]
45541
45465
-
Pro
GGG
[ENA]
¡û
>W1510134062
CFWS01000168
Betaproteobacteria
Bordetella pertussis B057 [CFWS]
5480
5556
+
Pro
GGG
[ENA]
¡û
>W1510135047
CFXM01000146
Betaproteobacteria
Bordetella pertussis B110 [CFXM]
5478
5554
+
Pro
GGG
[ENA]
¡û
>W1510135533
CFXW01000160
Betaproteobacteria
Bordetella pertussis B331 [CFXW]
2541
2465
-
Pro
GGG
[ENA]
¡û
>W1510145011
CGFM01000092
Betaproteobacteria
Bordetella pertussis B090 [CGFM]
5476
5552
+
Pro
GGG
[ENA]
¡û
>W1510147281
CGHF01000153
Betaproteobacteria
Bordetella pertussis B030 [CGHF]
5478
5554
+
Pro
GGG
[ENA]
¡û
>W1510217771
CIJJ01000173
Betaproteobacteria
Bordetella pertussis B079 [CIJJ]
2549
2473
-
Pro
GGG
[ENA]
¡û
>W1510537904
CSNS01000166
Betaproteobacteria
Bordetella pertussis B044 [CSNS]
2531
2455
-
Pro
GGG
[ENA]
¡û
>W1510538499
CSOE01000170
Betaproteobacteria
Bordetella pertussis B076 [CSOE]
5454
5530
+
Pro
GGG
[ENA]
¡û
>W1510540313
CSPQ01000160
Betaproteobacteria
Bordetella pertussis B342 [CSPQ]
5477
5553
+
Pro
GGG
[ENA]
¡û
>W1510541406
CSQN01000133
Betaproteobacteria
Bordetella pertussis B259 [CSQN]
2531
2455
-
Pro
GGG
[ENA]
¡û
>W1510639106
CVJA01000166
Betaproteobacteria
Bordetella pertussis B301 [CVJA]
5459
5535
+
Pro
GGG
[ENA]
¡û
>C121006939
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
2075800
2075876
+
Pro
GGG
[Ensembl]
¡û
>W1610071704
BCUG01000029
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
81331
81407
+
Pro
GGG
[ENA]
¡û
>W1610093720
CYTE01000015
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
50941
51017
+
Pro
GGG
[ENA]
¡û
>W1610094415
CYTS01000020
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
35490
35414
-
Pro
GGG
[ENA]
¡û
>C131019699
HE798385
Betaproteobacteria
Achromobacter xylosoxidans NH44784-1996 [HE798385]
4177463
4177539
+
Pro
GGG
-
¡û
>W1630014615
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
444252
444328
+
Pro
GGG
[ENA]
¡û
>W1730017258
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
444252
444328
+
Pro
GGG
[ENA]
¡û
>W1710068906
BCUG01000029
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
81331
81407
+
Pro
GGG
[ENA]
¡û
>W1710096763
CYTE01000015
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
50941
51017
+
Pro
GGG
[ENA]
¡û
>W1710097416
CYTS01000020
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
35490
35414
-
Pro
GGG
[ENA]
¡û
>W1710539442
FNVJ01000001
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
431740
431664
-
Pro
GGG
[ENA]
¡û
>W1710731420
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
557937
558013
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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