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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188598 (49 seq.)
>W1711009710
LQQV01000126
Bacillota
Brevibacillus parabrevis [LQQV]
235461
235537
+
Met
CAT
[ENA]
¡û
>W1711168719
LVYG01000058
Bacillota
Brevibacillus brevis [LVYG]
297
373
+
Met
CAT
[ENA]
¡û
>W131006817
AHKL01000052
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
83
159
+
Met
CAT
[ENA]
¡û
>W1711495787
MKMW01000013
Bacillota
Listeria monocytogenes [MKMW]
990
1065
+
Met
CAT
[ENA]
¡û
>W1711800081
MXAR01000066
Bacillota
Brevibacillus brevis [MXAR]
496
572
+
Met
CAT
[ENA]
¡û
>W131104100
APBN01000006
Bacillota
Brevibacillus borstelensis AK1 [APBN]
254292
254216
-
Met
CAT
[ENA]
¡û
>C171036840
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1972335
1972260
-
Met
CAT
-
¡û
>W141054037
AODD01000042
Bacillota
Listeria grandensis FSL F6-971 [AODD]
278
354
+
Met
CAT
[ENA]
¡û
>W141054419
AODJ01000059
Bacillota
Listeria weihenstephanensis FSL R9-0317 [AODJ]
936
1012
+
Met
CAT
[ENA]
¡û
>W141054450
AODK01000041
Bacillota
Listeria rocourtiae FSL F6-920 [AODK]
180
256
+
Met
CAT
[ENA]
¡û
>W141054547
AODL01000054
Bacillota
Listeria riparia FSL S10-1204 [AODL]
1086
1162
+
Met
CAT
[ENA]
¡û
>W141093518
AVBJ01000034
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
33663
33739
+
Met
CAT
[ENA]
¡û
>WENV181671673
OGON01004171
[OGON] human gut metagenome; faeces
85
9
-
Met
CAT
[ENA]
¢þ
>W141291568
JATL01000054
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
699
623
-
Met
CAT
[ENA]
¡û
>WENV170695875
LGVE01183873
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
13088
13012
-
Met
CAT
[ENA]
¢þ
>WENV170699332
LGVF01528473
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
14888
14812
-
Met
CAT
[ENA]
¢þ
>C181030611
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
5475341
5475417
+
Met
CAT
-
¡û
>C181118973
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
1598691
1598767
+
Met
CAT
-
¡û
>C181188382
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
8454
8530
+
Met
CAT
-
¡û
>C191008693
CP011102
Bacillota
Listeria weihenstephanensis WS 4560 [CP011102]
2155147
2155072
-
Met
CAT
-
¡û
>C191041957
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
538054
537978
-
Met
CAT
-
¡û
>C191207541
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
8330
8406
+
Met
CAT
-
¡û
>W141727973
JNFS01000001
Bacillota
Brevibacillus laterosporus [JNFS]
1374886
1374810
-
Met
CAT
[ENA]
¡û
>W141808927
JPRB01000005
Bacillota
Brevibacillus borstelensis cifa_chp40 [JPRB]
136
212
+
Met
CAT
[ENA]
¡û
>W1910178397
BJEY01000013
Bacillota
Listeria newyorkensis Ln2-1 [BJEY]
96838
96763
-
Met
CAT
[ENA]
¡û
>C09101399
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
8785
8861
+
Met
CAT
[Ensembl]
¡û
>W1810001151
BEXF01000002
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
492199
492275
+
Met
CAT
[ENA]
¡û
>W1810067025
PDYN01000018
Bacillota
Sporosarcina sp. P16a [PDYN]
45639
45564
-
Met
CAT
[ENA]
¡û
>W1810067275
PDYS01000016
Bacillota
Sporosarcina sp. P1 [PDYS]
45639
45564
-
Met
CAT
[ENA]
¡û
>W1810067387
PDYU01000019
Bacillota
Sporosarcina sp. P21c [PDYU]
8805
8880
+
Met
CAT
[ENA]
¡û
>W1810067448
PDYV01000017
Bacillota
Sporosarcina sp. P25 [PDYV]
45638
45563
-
Met
CAT
[ENA]
¡û
>W1810391330
PXZL01000043
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
16665
16741
+
Met
CAT
[ENA]
¡û
>W1810391512
PXZN01000018
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
321
397
+
Met
CAT
[ENA]
¡û
>W1810391632
PXZO01000042
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
228497
228573
+
Met
CAT
[ENA]
¡û
>W1810658159
QJJD01000034
Bacillota
Brevibacillus laterosporus MG64 [QJJD]
332
408
+
Met
CAT
[ENA]
¡û
>W1511221017
JNEZ01000047
Bacillota
Listeriaceae bacterium FSL A5-0209 [JNEZ]
196434
196358
-
Met
CAT
[ENA]
¡û
>W1511221073
JNFA01000029
Bacillota
Listeria booriae FSL A5-0281 [JNFA]
1047
1123
+
Met
CAT
[ENA]
¡û
>W1511221101
JNFB01000002
Bacillota
Listeria newyorkensis FSL M6-0635 [JNFB]
955
1031
+
Met
CAT
[ENA]
¡û
>W11127159
ADXF01000706
Bacillota
Listeria marthii FSL S4-120 [ADXF]
326
251
-
Met
CAT
[ENA]
¡û
>W1511500260
JXAV01000054
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
198
274
+
Met
CAT
[ENA]
¡û
>W1511629683
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
903798
903874
+
Met
CAT
[ENA]
¡û
>W1511629703
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
906846
906922
+
Met
CAT
[ENA]
¡û
>W1511645862
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
5900031
5900107
+
Met
CAT
[ENA]
¡û
>W1511699610
LGIQ01000019
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
365
441
+
Met
CAT
[ENA]
¡û
>W121085034
AKIX01000131
Bacillota
Brevibacillus sp. BC25 [AKIX]
675
599
-
Met
CAT
[ENA]
¡û
>W121086601
AKKB01000113
Bacillota
Brevibacillus sp. CF112 [AKKB]
718
642
-
Met
CAT
[ENA]
¡û
>W1610858230
LQQV01000126
Bacillota
Brevibacillus parabrevis [LQQV]
235461
235537
+
Met
CAT
[ENA]
¡û
>W1610978514
LVYG01000058
Bacillota
Brevibacillus brevis [LVYG]
297
373
+
Met
CAT
[ENA]
¡û
>W1710081115
BDFB01000010
Bacillota
Brevibacillus brevis [BDFB]
369285
369361
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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