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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188756 (7 seq.)
>WENV180054074
MPLV02067197
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
583
508
-
Arg
ACG
[ENA]
¢þ
>WENV180582793
OCMR01083861
[OCMR] metagenome; diffuse fluid
11
86
+
Arg
ACG
[ENA]
¢þ
>WENV181308597
OFIT01001601
[OFIT] marine metagenome; seawater
310
384
+
Arg
ACG
[ENA]
¢þ
>WENV181314528
OFJK01009066
[OFJK] marine metagenome; seawater
484
410
-
Arg
ACG
[ENA]
¢þ
>WENV181403053
OFTZ01018243
[OFTZ] marine metagenome; seawater
500
425
-
Arg
ACG
[ENA]
¢þ
>WENV170252405
CEQU01005778
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
536
460
-
Arg
ACG
[ENA]
¢þ
>WENV170404067
CEUF01196061
[CEUF] marine metagenome genome assembly TARA_138_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
155
79
-
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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