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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189180 (64 seq.)
>W131219732
ATYU01000016
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
3933
3859
-
Pro
GGG
[ENA]
¡û
>W131224901
AUDD01000004
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
121537
121461
-
Pro
GGG
[ENA]
¡û
>W1711664230
MQVT01000001
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
178964
179040
+
Pro
GGG
[ENA]
¡û
>W1711664282
MQVU01000001
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
360878
360804
-
Pro
GGG
[ENA]
¡û
>C171044673
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
824127
824201
+
Pro
GGG
-
¡û
>C171092752
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
421286
421212
-
Pro
GGG
-
¡û
>WENV180017979
FSXZ01000986
[FSXZ] metagenome; soil
6234
6158
-
Pro
GGG
[ENA]
¢þ
>WENV180147869
OAUH01014194
[OAUH] human gut metagenome; faeces
75
-1
-
Pro
GGG
[ENA]
¢þ
>W141055800
AOSS01000039
Actinomycetota
Cutibacterium granulosum DSM 20700 [AOSS]
10924
10848
-
Pro
GGG
[ENA]
¡û
>W141055856
AOST01000037
Actinomycetota
Cutibacterium granulosum TM11 [AOST]
142650
142574
-
Pro
GGG
[ENA]
¡û
>WENV180711864
ODFR01000140
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
9430
9504
+
Pro
GGG
[ENA]
¢þ
>WENV180855559
ODKY01000029
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
85796
85870
+
Pro
GGG
[ENA]
¢þ
>WENV181123301
OEFP01000006
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
260620
260694
+
Pro
GGG
[ENA]
¢þ
>WENV181389379
OFRN01003831
[OFRN] metagenome; faeces
272
348
+
Pro
GGG
[ENA]
¢þ
>W141156090
AXMM01000005
Actinomycetota
Propionibacterium sp. KPL1844 [AXMM]
261309
261385
+
Pro
GGG
[ENA]
¡û
>WENV181824968
OGUK01028119
[OGUK] human gut metagenome; faeces
588
512
-
Pro
GGG
[ENA]
¢þ
>WENV181904936
OGXX01051481
[OGXX] human gut metagenome; faeces
734
658
-
Pro
GGG
[ENA]
¢þ
>WENV181940529
OGYY01000001
[OGYY] human gut metagenome; faeces
254377
254453
+
Pro
GGG
[ENA]
¢þ
>WENV182635915
OJKZ01000016
[OJKZ] metagenome; surface
53294
53220
-
Pro
GGG
[ENA]
¢þ
>WENV182640041
OJLB01000090
[OJLB] metagenome; surface
9311
9385
+
Pro
GGG
[ENA]
¢þ
>WENV182643034
OJLS01000151
[OJLS] metagenome; surface
8925
8999
+
Pro
GGG
[ENA]
¢þ
>WENV182643588
OJLW01000143
[OJLW] metagenome; surface
9254
9328
+
Pro
GGG
[ENA]
¢þ
>WENV182644554
OJLY01000009
[OJLY] metagenome; surface
218994
219068
+
Pro
GGG
[ENA]
¢þ
>WENV182645828
OJLZ01004970
[OJLZ] metagenome; surface
1527
1453
-
Pro
GGG
[ENA]
¢þ
>WENV182799899
OJTY01000002
[OJTY] human gut metagenome; human gut
87332
87258
-
Pro
GGG
[ENA]
¢þ
>WENV182800692
OJUF01000548
[OJUF] human gut metagenome; human gut
7726
7652
-
Pro
GGG
[ENA]
¢þ
>WENV182804540
OJUV01000480
[OJUV] human gut metagenome; human gut
802
728
-
Pro
GGG
[ENA]
¢þ
>WENV182807545
OJVY01000001
[OJVY] human gut metagenome; human gut
279954
279880
-
Pro
GGG
[ENA]
¢þ
>WENV182816456
OJZA01001060
[OJZA] human gut metagenome; human gut
3618
3544
-
Pro
GGG
[ENA]
¢þ
>WENV182823200
OKBS01000320
[OKBS] human gut metagenome; human gut
19479
19405
-
Pro
GGG
[ENA]
¢þ
>WENV182835576
OKFO01000177
[OKFO] human gut metagenome; human gut
9101
9175
+
Pro
GGG
[ENA]
¢þ
>WENV182837478
OKGH01000127
[OKGH] human gut metagenome; human gut
10457
10531
+
Pro
GGG
[ENA]
¢þ
>WENV182845600
OKJE01000115
[OKJE] human gut metagenome; human gut
32792
32866
+
Pro
GGG
[ENA]
¢þ
>WENV182849507
OKKR01002476
[OKKR] human gut metagenome; human gut
388
462
+
Pro
GGG
[ENA]
¢þ
>WENV182849719
OKKT01001375
[OKKT] human gut metagenome; human gut
461
387
-
Pro
GGG
[ENA]
¢þ
>WENV182851664
OKLR01000017
[OKLR] human gut metagenome; human gut
37303
37377
+
Pro
GGG
[ENA]
¢þ
>WENV182852246
OKLW01000180
[OKLW] human gut metagenome; human gut
15749
15675
-
Pro
GGG
[ENA]
¢þ
>WENV182852449
OKLY01000179
[OKLY] human gut metagenome; human gut
6106
6180
+
Pro
GGG
[ENA]
¢þ
>WENV182858385
OKOE01000002
[OKOE] human gut metagenome; human gut
321677
321603
-
Pro
GGG
[ENA]
¢þ
>WENV182858662
OKOG01000001
[OKOG] human gut metagenome; human gut
263103
263177
+
Pro
GGG
[ENA]
¢þ
>WENV182863222
OKPS01000001
[OKPS] human gut metagenome; human gut
58074
58000
-
Pro
GGG
[ENA]
¢þ
>WENV183190378
OLPR01000230
[OLPR] human gut metagenome; faeces
11623
11699
+
Pro
GGG
[ENA]
¢þ
>WENV183276916
OLRZ01049137
[OLRZ] human gut metagenome; faeces
323
399
+
Pro
GGG
[ENA]
¢þ
>WENV183511668
OMJG01001671
[OMJG] food metagenome; Cotija cheese
11389
11464
+
Pro
GGG
[ENA]
¢þ
>WENV170784003
MCHG01000001
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1282161
1282237
+
Pro
GGG
[ENA]
¢þ
>WENV170921898
MDTG01022091
[MDTG] marine metagenome; seawater
4251
4325
+
Pro
GGG
[ENA]
¢þ
>C181224542
LT906441
Actinomycetota
Cutibacterium granulosum NCTC11865 [LT906441]
1512790
1512714
-
Pro
GGG
-
¡û
>C181232168
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
2455308
2455382
+
Pro
GGG
-
¡û
>C191036562
CP025570
Actinomycetota
Acidipropionibacterium jensenii JS280 [CP025570]
1418539
1418465
-
Pro
GGG
-
¡û
>C191036588
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
1713650
1713724
+
Pro
GGG
-
¡û
>C191073495
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
2052171
2052097
-
Pro
GGG
-
¡û
>C191180451
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
1491824
1491898
+
Pro
GGG
-
¡û
>C191180523
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
2549264
2549189
-
Pro
GGG
-
¡û
>C191211347
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
263398
263324
-
Pro
GGG
-
¡û
>W1510061635
CCYM01000003
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
310118
310192
+
Pro
GGG
[ENA]
¡û
>W11138428
AEIQ01000008
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
24102
24028
-
Pro
GGG
[ENA]
¡û
>C161051574
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
2868812
2868886
+
Pro
GGG
-
¡û
>C161071848
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
525486
525560
+
Pro
GGG
[Ensembl]
¡û
>C131003881
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
1842975
1842901
-
Pro
GGG
[Ensembl]
¡û
>W1610521560
JNBU01000002
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
261962
262038
+
Pro
GGG
[ENA]
¡û
>W1610521600
JNBU01000059
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
10924
10848
-
Pro
GGG
[ENA]
¡û
>W1710561671
FOOI01000009
Actinomycetota
Actinopolymorpha cephalotaxi [FOOI]
265134
265060
-
Pro
GGG
[ENA]
¡û
>W1710620845
JNBU01000002
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
261962
262038
+
Pro
GGG
[ENA]
¡û
>W1710620885
JNBU01000059
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
10924
10848
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK