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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189231 (124 seq.)
>W1711302777
MAJF01000019
Campylobacterota
Helicobacter pullorum [MAJF]
53744
53820
+
Arg
TCT
[ENA]
¡û
>W1711302813
MAJG01000044
Campylobacterota
Helicobacter pullorum [MAJG]
5594
5518
-
Arg
TCT
[ENA]
¡û
>W1711306384
MANK01000035
Campylobacterota
Helicobacter pullorum [MANK]
5570
5494
-
Arg
TCT
[ENA]
¡û
>W1711307545
MAOZ01000012
Campylobacterota
Helicobacter pullorum [MAOZ]
5598
5522
-
Arg
TCT
[ENA]
¡û
>W1711307585
MAPA01000032
Campylobacterota
Helicobacter pullorum [MAPA]
5552
5476
-
Arg
TCT
[ENA]
¡û
>W1711307653
MAPC01000015
Campylobacterota
Helicobacter pullorum [MAPC]
51749
51825
+
Arg
TCT
[ENA]
¡û
>W1711307729
MAPE01000017
Campylobacterota
Helicobacter pullorum [MAPE]
52369
52445
+
Arg
TCT
[ENA]
¡û
>WENV180042279
LQAE01000125
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
3536
3461
-
Arg
TCT
[ENA]
¢þ
>WENV180043446
LQAI01000026
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
70006
69931
-
Arg
TCT
[ENA]
¢þ
>WENV180043880
LQAJ01000033
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
67608
67683
+
Arg
TCT
[ENA]
¢þ
>W08010327
ABQT01000015
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
81041
80968
-
Arg
TCT
[ENA]
¡û
>W08010377
ABQU01000091
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
12446
12522
+
Arg
TCT
[ENA]
¡û
>W141275681
JADE01000005
Campylobacterota
Helicobacter pametensis ATCC 51478 [JADE]
101151
101227
+
Arg
TCT
[ENA]
¡û
>WENV183708225
PDWI01013993
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
503
579
+
Arg
TCT
[ENA]
¢þ
>WENV183708435
PDWI01016013
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
21
97
+
Arg
TCT
[ENA]
¢þ
>WENV183711393
PDWI01068549
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
893
817
-
Arg
TCT
[ENA]
¢þ
>WENV183711515
PDWI01071737
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2453
2377
-
Arg
TCT
[ENA]
¢þ
>WENV183712739
PDWI01111989
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1
77
+
Arg
TCT
[ENA]
¢þ
>WENV183721573
PDWJ01075748
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
992
1068
+
Arg
TCT
[ENA]
¢þ
>WENV170598356
FUWD010033171
[FUWD] metagenome; unknown
224
300
+
Arg
TCT
[ENA]
¢þ
>WENV170598368
FUWD010033253
[FUWD] metagenome; unknown
501
425
-
Arg
TCT
[ENA]
¢þ
>WENV170598375
FUWD010033492
[FUWD] metagenome; unknown
401
325
-
Arg
TCT
[ENA]
¢þ
>WENV170599980
FUWD010100986
[FUWD] metagenome; unknown
131
207
+
Arg
TCT
[ENA]
¢þ
>WENV170601657
FUWD010185847
[FUWD] metagenome; unknown
75
-1
-
Arg
TCT
[ENA]
¢þ
>WENV170615308
FUWD012854274
[FUWD] metagenome; unknown
412
488
+
Arg
TCT
[ENA]
¢þ
>WENV170615311
FUWD012854275
[FUWD] metagenome; unknown
324
400
+
Arg
TCT
[ENA]
¢þ
>WENV170615314
FUWD012854276
[FUWD] metagenome; unknown
290
366
+
Arg
TCT
[ENA]
¢þ
>WENV170615317
FUWD012854277
[FUWD] metagenome; unknown
274
350
+
Arg
TCT
[ENA]
¢þ
>WENV170615586
FUWD012861553
[FUWD] metagenome; unknown
126
202
+
Arg
TCT
[ENA]
¢þ
>WENV170615811
FUWD012869355
[FUWD] metagenome; unknown
191
267
+
Arg
TCT
[ENA]
¢þ
>WENV170616416
FUWD012887447
[FUWD] metagenome; unknown
228
304
+
Arg
TCT
[ENA]
¢þ
>WENV170617733
FUWD012935573
[FUWD] metagenome; unknown
292
368
+
Arg
TCT
[ENA]
¢þ
>WENV170623804
FUWD013171205
[FUWD] metagenome; unknown
2830
2754
-
Arg
TCT
[ENA]
¢þ
>WENV170623807
FUWD013171206
[FUWD] metagenome; unknown
330
254
-
Arg
TCT
[ENA]
¢þ
>WENV170624081
FUWD013174811
[FUWD] metagenome; unknown
2957
3033
+
Arg
TCT
[ENA]
¢þ
>WENV170632089
FUWD013378155
[FUWD] metagenome; unknown
2830
2754
-
Arg
TCT
[ENA]
¢þ
>WENV170632092
FUWD013378156
[FUWD] metagenome; unknown
330
254
-
Arg
TCT
[ENA]
¢þ
>WENV170632368
FUWD013381103
[FUWD] metagenome; unknown
2957
3033
+
Arg
TCT
[ENA]
¢þ
>WENV170638774
JFBN01561466
[JFBN] chicken gut metagenome; ceca of Broiler chicken
12751
12827
+
Arg
TCT
[ENA]
¢þ
>WENV170766779
LWDU01042707
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
88
12
-
Arg
TCT
[ENA]
¢þ
>C181054495
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1899485
1899409
-
Arg
TCT
-
¡û
>C191000225
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
618788
618712
-
Arg
TCT
-
¡û
>C191002300
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
645618
645542
-
Arg
TCT
-
¡û
>C191213736
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
919905
919829
-
Arg
TCT
-
¡û
>W141558679
JHWC01000008
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
82699
82775
+
Arg
TCT
[ENA]
¡û
>W141701678
JMKW01000003
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
17393
17317
-
Arg
TCT
[ENA]
¡û
>W09119145
ACDN01000081
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
42737
42813
+
Arg
TCT
[ENA]
¡û
>W09119181
ACDO01000027
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
12222
12298
+
Arg
TCT
[ENA]
¡û
>W09134343
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
456631
456555
-
Arg
TCT
[ENA]
¡û
>W1910006443
AZTD01001243
Campylobacterota
Helicobacter bilis ATCC 51630 [AZTD]
126
202
+
Arg
TCT
[ENA]
¡û
>W1910546154
FZMJ01000005
Campylobacterota
Helicobacter cinaedi [FZMJ]
266
190
-
Arg
TCT
[ENA]
¡û
>W1910546536
FZMT01000026
Campylobacterota
Helicobacter bilis [FZMT]
42625
42549
-
Arg
TCT
[ENA]
¡û
>W1910546608
FZMV01000019
Campylobacterota
Helicobacter pullorum [FZMV]
52513
52589
+
Arg
TCT
[ENA]
¡û
>W1910546682
FZMX01000016
Campylobacterota
Helicobacter pullorum [FZMX]
52287
52363
+
Arg
TCT
[ENA]
¡û
>W1910546789
FZND01000027
Campylobacterota
Helicobacter trogontum [FZND]
2090
2166
+
Arg
TCT
[ENA]
¡û
>W1910546818
FZNE01000002
Campylobacterota
Helicobacter cholecystus [FZNE]
267262
267338
+
Arg
TCT
[ENA]
¡û
>W1910546892
FZNG01000016
Campylobacterota
Helicobacter trogontum [FZNG]
74171
74247
+
Arg
TCT
[ENA]
¡û
>W1910549543
FZPI01000002
Campylobacterota
Helicobacter pametensis [FZPI]
202903
202827
-
Arg
TCT
[ENA]
¡û
>W1910549563
FZPJ01000006
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
9600
9676
+
Arg
TCT
[ENA]
¡û
>W1910549613
FZPK01000006
Campylobacterota
Helicobacter rappini [FZPK]
44378
44302
-
Arg
TCT
[ENA]
¡û
>W1910549653
FZPL01000004
Campylobacterota
Helicobacter pametensis [FZPL]
61228
61152
-
Arg
TCT
[ENA]
¡û
>W1910549711
FZPN01000004
Campylobacterota
Helicobacter canadensis [FZPN]
215681
215757
+
Arg
TCT
[ENA]
¡û
>W1910549759
FZPO01000048
Campylobacterota
Helicobacter equorum [FZPO]
37579
37655
+
Arg
TCT
[ENA]
¡û
>W1910549801
FZPP01000026
Campylobacterota
Helicobacter marmotae [FZPP]
46069
46145
+
Arg
TCT
[ENA]
¡û
>W1910584344
JXTX01000010
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
54469
54545
+
Arg
TCT
[ENA]
¡û
>W1910663829
MBPH01000040
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
61143
61067
-
Arg
TCT
[ENA]
¡û
>W1910663864
MBPI01000038
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
12296
12372
+
Arg
TCT
[ENA]
¡û
>W1910663900
MBPJ01000044
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
61053
60977
-
Arg
TCT
[ENA]
¡û
>W1910663904
MBPK01000001
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
61053
60977
-
Arg
TCT
[ENA]
¡û
>W1910663940
MBPL01000001
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
61051
60975
-
Arg
TCT
[ENA]
¡û
>W1910756115
MLAN01000016
Campylobacterota
Helicobacter sp. 11S02629-2 [MLAN]
22707
22783
+
Arg
TCT
[ENA]
¡û
>W1910756254
MLAR01000013
Campylobacterota
Helicobacter sp. 13S00401-1 [MLAR]
43016
42940
-
Arg
TCT
[ENA]
¡û
>W1910852920
NBIU01000038
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
8196
8272
+
Arg
TCT
[ENA]
¡û
>W1910889347
NESU01000005
Campylobacterota
Helicobacter sp. TUL [NESU]
35796
35872
+
Arg
TCT
[ENA]
¡û
>W1911770826
QXJF01000012
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
62719
62643
-
Arg
TCT
[ENA]
¡û
>W1911770867
QXJG01000025
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
10885
10961
+
Arg
TCT
[ENA]
¡û
>W1810002686
BEYY01000269
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
2674
2598
-
Arg
TCT
[ENA]
¡û
>W1810002758
BEZB01000233
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
1499
1423
-
Arg
TCT
[ENA]
¡û
>W1810002774
BEZC01000120
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
1495
1419
-
Arg
TCT
[ENA]
¡û
>W1810002801
BEZD01000051
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
1502
1426
-
Arg
TCT
[ENA]
¡û
>W1810002903
BEZF01000257
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
5958
6034
+
Arg
TCT
[ENA]
¡û
>W1810002921
BEZG01000119
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
2673
2597
-
Arg
TCT
[ENA]
¡û
>W1810002981
BEZI01000061
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
5923
5999
+
Arg
TCT
[ENA]
¡û
>W1810003109
BEZL01000173
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
5922
5998
+
Arg
TCT
[ENA]
¡û
>W1810003144
BEZM01000140
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
5919
5995
+
Arg
TCT
[ENA]
¡û
>W1810003245
BEZP01000179
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
1556
1480
-
Arg
TCT
[ENA]
¡û
>W1810003286
BEZQ01000144
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
2673
2597
-
Arg
TCT
[ENA]
¡û
>W1810003310
BEZR01000041
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
2675
2599
-
Arg
TCT
[ENA]
¡û
>W1810003362
BEZS01000189
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
2699
2623
-
Arg
TCT
[ENA]
¡û
>W1810010780
BGKF01000153
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
5904
5980
+
Arg
TCT
[ENA]
¡û
>W1810010816
BGKG01000216
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
8227
8151
-
Arg
TCT
[ENA]
¡û
>W1810046386
NXLL01000046
Campylobacterota
Helicobacter sp. MIT 00-7814 [NXLL]
3877
3953
+
Arg
TCT
[ENA]
¡û
>W1810046421
NXLM01000040
Campylobacterota
Helicobacter sp. MIT 99-10781 [NXLM]
3877
3953
+
Arg
TCT
[ENA]
¡û
>W1810046573
NXLQ01000017
Campylobacterota
Helicobacter didelphidarum MIT 17-337 [NXLQ]
39720
39644
-
Arg
TCT
[ENA]
¡û
>W1810046617
NXLS01000002
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
109284
109360
+
Arg
TCT
[ENA]
¡û
>W1810046676
NXLT01000007
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
13898
13974
+
Arg
TCT
[ENA]
¡û
>W1810046687
NXLU01000001
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
262140
262216
+
Arg
TCT
[ENA]
¡û
>W1810046745
NXLV01000015
Campylobacterota
Helicobacter brantae MIT 04-9366 [NXLV]
24229
24305
+
Arg
TCT
[ENA]
¡û
>ENV09001936
ACSG01000057
Uncultured SUP05 cluster bacterium Contig34382
1298
1374
+
Arg
TCT
[ENA]
¡û
>W1511350873
JRMS01000092
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
281
205
-
Arg
TCT
[ENA]
¡û
>W1511353114
JROY01000033
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
11594
11670
+
Arg
TCT
[ENA]
¡û
>W1511353147
JROZ01000001
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
436700
436624
-
Arg
TCT
[ENA]
¡û
>W1511353265
JRPC01000141
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
1895
1971
+
Arg
TCT
[ENA]
¡û
>W1511353345
JRPE01000119
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
2430
2506
+
Arg
TCT
[ENA]
¡û
>W1511353354
JRPF01000001
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
125641
125717
+
Arg
TCT
[ENA]
¡û
>W1511353418
JRPG01000078
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
3064
2988
-
Arg
TCT
[ENA]
¡û
>W1511353557
JRPK01000112
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
1340
1264
-
Arg
TCT
[ENA]
¡û
>W1511353586
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
837167
837091
-
Arg
TCT
[ENA]
¡û
>C161097579
CP016503
Campylobacterota
Helicobacter enhydrae MIT 01-6242 [CP016503]
1045302
1045378
+
Arg
TCT
[Ensembl]
¡û
>C161108065
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
600327
600251
-
Arg
TCT
[Ensembl]
¡û
>C131000563
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
632481
632405
-
Arg
TCT
[Ensembl]
¡û
>W1610522084
JNOA01000073
Campylobacterota
Helicobacter pullorum [JNOA]
18020
18096
+
Arg
TCT
[ENA]
¡û
>W1610522121
JNOB01000040
Campylobacterota
Helicobacter pullorum [JNOB]
52390
52466
+
Arg
TCT
[ENA]
¡û
>W1610522154
JNOC01000080
Campylobacterota
Helicobacter pullorum [JNOC]
57914
57990
+
Arg
TCT
[ENA]
¡û
>W1611053102
MAJF01000019
Campylobacterota
Helicobacter pullorum [MAJF]
53744
53820
+
Arg
TCT
[ENA]
¡û
>W1611053138
MAJG01000044
Campylobacterota
Helicobacter pullorum [MAJG]
5594
5518
-
Arg
TCT
[ENA]
¡û
>W1611055738
MANK01000035
Campylobacterota
Helicobacter pullorum [MANK]
5570
5494
-
Arg
TCT
[ENA]
¡û
>W1611055828
MAOZ01000012
Campylobacterota
Helicobacter pullorum [MAOZ]
5598
5522
-
Arg
TCT
[ENA]
¡û
>W1611055868
MAPA01000032
Campylobacterota
Helicobacter pullorum [MAPA]
5552
5476
-
Arg
TCT
[ENA]
¡û
>W1611055936
MAPC01000015
Campylobacterota
Helicobacter pullorum [MAPC]
51749
51825
+
Arg
TCT
[ENA]
¡û
>W1611056012
MAPE01000017
Campylobacterota
Helicobacter pullorum [MAPE]
52369
52445
+
Arg
TCT
[ENA]
¡û
>W1710622010
JNOA01000073
Campylobacterota
Helicobacter pullorum [JNOA]
18020
18096
+
Arg
TCT
[ENA]
¡û
>W1710622047
JNOB01000040
Campylobacterota
Helicobacter pullorum [JNOB]
52390
52466
+
Arg
TCT
[ENA]
¡û
>W1710622080
JNOC01000080
Campylobacterota
Helicobacter pullorum [JNOC]
57914
57990
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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