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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189515 (97 seq.)
>W1710914129
LNTC01000006
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
17092
17016
-
Met
CAT
[ENA]
¡û
>W1710979355
LPNY01000132
Campylobacterota
Arcobacter sp. EP1 [LPNY]
126785
126709
-
Met
CAT
[ENA]
¡û
>W1711055360
LRUS01000082
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
59485
59561
+
Met
CAT
[ENA]
¡û
>W1711484250
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
475671
475747
+
Met
CAT
[ENA]
¡û
>W1711484286
MKCO01000015
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
187
263
+
Met
CAT
[ENA]
¡û
>W1711484300
MKCO01000037
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
90
166
+
Met
CAT
[ENA]
¡û
>W1711484305
MKCO01000037
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
617
693
+
Met
CAT
[ENA]
¡û
>C171088974
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2013394
2013318
-
Met
CAT
-
¡û
>C171088986
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1464211
1464135
-
Met
CAT
-
¡û
>WENV180284224
OBID01021629
[OBID] metagenome; sludge
92
168
+
Met
CAT
[ENA]
¢þ
>WENV181732511
OGQD01045663
[OGQD] human gut metagenome; faeces
472
548
+
Met
CAT
[ENA]
¢þ
>W141274758
JABW01000022
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
46537
46461
-
Met
CAT
[ENA]
¡û
>W141289888
JARS01000026
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
18508
18432
-
Met
CAT
[ENA]
¡û
>W141289940
JART01000023
Campylobacterota
Arcobacter sp. AF1028 [JART]
18508
18432
-
Met
CAT
[ENA]
¡û
>W141289985
JARU01000015
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
32201
32277
+
Met
CAT
[ENA]
¡û
>W141290044
JARV01000012
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
59515
59591
+
Met
CAT
[ENA]
¡û
>W141291670
JATO01000018
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
30923
30999
+
Met
CAT
[ENA]
¡û
>WENV170012645
ASRM01015706
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
318
242
-
Met
CAT
[ENA]
¢þ
>WENV170012728
ASRN01005716
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
70
146
+
Met
CAT
[ENA]
¢þ
>WENV170012916
ASRP01026500
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
188
112
-
Met
CAT
[ENA]
¢þ
>WENV170013005
ASRQ01004319
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
80
156
+
Met
CAT
[ENA]
¢þ
>WENV170014508
AYRG01005260
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
188
112
-
Met
CAT
[ENA]
¢þ
>WENV170573039
FLOH01004406
[FLOH] marine metagenome; water
368
292
-
Met
CAT
[ENA]
¢þ
>WENV170635244
JDSF01000383
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
5818
5894
+
Met
CAT
[ENA]
¢þ
>WENV170635575
JDSG01000121
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
20286
20362
+
Met
CAT
[ENA]
¢þ
>WENV170646421
JQGR01003097
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
532
456
-
Met
CAT
[ENA]
¢þ
>WENV170646425
JQGR01003681
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
267
343
+
Met
CAT
[ENA]
¢þ
>WENV170658624
JTFP01164019
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1025
1101
+
Met
CAT
[ENA]
¢þ
>WENV170704296
LLEJ01002099
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1407
1331
-
Met
CAT
[ENA]
¢þ
>WENV170704936
LLEN01018682
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
36
112
+
Met
CAT
[ENA]
¢þ
>WENV170780520
MAAB01004074
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1783
1859
+
Met
CAT
[ENA]
¢þ
>WENV170780775
MAAB01021012
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
230
154
-
Met
CAT
[ENA]
¢þ
>WENV170781358
MAAB01032619
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
692
768
+
Met
CAT
[ENA]
¢þ
>WENV170781783
MAAC01000414
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3979
3903
-
Met
CAT
[ENA]
¢þ
>WENV170782977
MAAC01012363
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1042
966
-
Met
CAT
[ENA]
¢þ
>C181196997
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1977125
1977049
-
Met
CAT
-
¡û
>C181197008
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1360014
1359938
-
Met
CAT
-
¡û
>C181197061
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2056730
2056654
-
Met
CAT
-
¡û
>C181197071
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1426390
1426314
-
Met
CAT
-
¡û
>C181199805
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1480369
1480445
+
Met
CAT
-
¡û
>C191084424
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
1465413
1465489
+
Met
CAT
-
¡û
>C191084474
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180779
180855
+
Met
CAT
-
¡û
>C191084505
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1427983
1427907
-
Met
CAT
-
¡û
>C191084673
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1363048
1362972
-
Met
CAT
-
¡û
>C191095042
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1528943
1529019
+
Met
CAT
-
¡û
>C191095088
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1571496
1571572
+
Met
CAT
-
¡û
>C191147197
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1794633
1794557
-
Met
CAT
-
¡û
>C191147206
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1404264
1404188
-
Met
CAT
-
¡û
>C191186422
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
1554752
1554676
-
Met
CAT
-
¡û
>W1911413077
NWVW01000017
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
6431
6507
+
Met
CAT
[ENA]
¡û
>W1911413115
NWVX01000017
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
47988
48064
+
Met
CAT
[ENA]
¡û
>W1911419361
NXAO01000011
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
25908
25832
-
Met
CAT
[ENA]
¡û
>W1911424173
NXFY01000008
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
54485
54561
+
Met
CAT
[ENA]
¡û
>W1911424199
NXFY01000030
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
3058
2982
-
Met
CAT
[ENA]
¡û
>W1911424387
NXGD01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
57890
57814
-
Met
CAT
[ENA]
¡û
>W1911424410
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
255699
255775
+
Met
CAT
[ENA]
¡û
>W1911424543
NXGH01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
44181
44105
-
Met
CAT
[ENA]
¡û
>W1911424584
NXGI01000004
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
36799
36875
+
Met
CAT
[ENA]
¡û
>W1911424626
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
410017
409941
-
Met
CAT
[ENA]
¡û
>W1911424655
NXGK01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
57759
57835
+
Met
CAT
[ENA]
¡û
>W1911426173
NXID01000004
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
5339
5263
-
Met
CAT
[ENA]
¡û
>W1911426213
NXID01000069
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
3133
3057
-
Met
CAT
[ENA]
¡û
>W1911426219
NXIE01000001
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
462138
462214
+
Met
CAT
[ENA]
¡û
>W1911426287
NXIF01000036
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
45694
45618
-
Met
CAT
[ENA]
¡û
>W1911426300
NXIF01000048
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
3056
2980
-
Met
CAT
[ENA]
¡û
>W1911426332
NXIG01000008
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
106434
106358
-
Met
CAT
[ENA]
¡û
>W1911576066
PDJS01000007
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
18794
18870
+
Met
CAT
[ENA]
¡û
>W1911576158
PDJU01000009
Campylobacterota
Arcobacter sp. F155 [PDJU]
3119
3195
+
Met
CAT
[ENA]
¡û
>W1911576258
PDJW01000060
Campylobacterota
Malaciobacter mytili T234 [PDJW]
3153
3077
-
Met
CAT
[ENA]
¡û
>W1911576263
PDJW01000068
Campylobacterota
Malaciobacter mytili T234 [PDJW]
5177
5101
-
Met
CAT
[ENA]
¡û
>W1911576301
PDJX01000010
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
54494
54570
+
Met
CAT
[ENA]
¡û
>W1911576322
PDJX01000025
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
19603
19679
+
Met
CAT
[ENA]
¡û
>W1911576348
PDJY01000031
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
10467
10391
-
Met
CAT
[ENA]
¡û
>W1911576443
PDKB01000003
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
122732
122656
-
Met
CAT
[ENA]
¡û
>W1911576484
PDKC01000004
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
63340
63264
-
Met
CAT
[ENA]
¡û
>W1911576517
PDKC01000045
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
12289
12365
+
Met
CAT
[ENA]
¡û
>W1911576545
PDKD01000006
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
67477
67401
-
Met
CAT
[ENA]
¡û
>W1911576593
PDKE01000011
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
117744
117668
-
Met
CAT
[ENA]
¡û
>W1911576645
PDKF01000024
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
4967
5043
+
Met
CAT
[ENA]
¡û
>W1911576673
PDKG01000007
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
66698
66774
+
Met
CAT
[ENA]
¡û
>W1911576688
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
19587
19663
+
Met
CAT
[ENA]
¡û
>W1911576766
PDKI01000009
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
39836
39760
-
Met
CAT
[ENA]
¡û
>W1911576777
PDKJ01000001
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
277326
277402
+
Met
CAT
[ENA]
¡û
>W1911576835
PDKK01000010
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
13027
13103
+
Met
CAT
[ENA]
¡û
>W1911576954
PDKN01000002
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
162464
162388
-
Met
CAT
[ENA]
¡û
>W1911577004
PDKO01000003
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
153216
153140
-
Met
CAT
[ENA]
¡û
>W1810058591
PDKA01000005
Campylobacterota
Arcobacter sp. FW59 [PDKA]
49244
49320
+
Met
CAT
[ENA]
¡û
>W1810295906
PTIW01000011
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
42837
42761
-
Met
CAT
[ENA]
¡û
>W1810462551
PZYW01000001
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
196055
195979
-
Met
CAT
[ENA]
¡û
>C11101044
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
1581269
1581345
+
Met
CAT
[Ensembl]
¡û
>W1511327950
JQIT01000004
Campylobacterota
Sulfuricurvum sp. PC08-66 [JQIT]
175023
175099
+
Met
CAT
[ENA]
¡û
>W1511517361
JXXG01000001
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
105245
105321
+
Met
CAT
[ENA]
¡û
>WENV069201
AACY023756624
Marine microbial communities from Global Ocean Sampling (GOS)
644
566
-
Met
CAT
[ENA]
>W1610835346
LPNY01000132
Campylobacterota
Arcobacter sp. EP1 [LPNY]
126785
126709
-
Met
CAT
[ENA]
¡û
>W1610896406
LRUS01000082
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
59485
59561
+
Met
CAT
[ENA]
¡û
>W1710082855
BDIR01000003
Campylobacterota
Arcobacter sp. LA11 [BDIR]
53513
53589
+
Met
CAT
[ENA]
¡û
>W1710602843
FUYO01000023
Campylobacterota
Malaciobacter marinus [FUYO]
42144
42068
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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