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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18963 (5 seq.)
>W131108929
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
197016
196926
-
Ser
TGA
[ENA]
¡û
>C006916
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2353899
2353809
-
Ser
TGA
[Ensembl]
¡û
>WENV181226128
OFDK01000075
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
21433
21523
+
Ser
TGA
[ENA]
¢þ
>W09104538
AALW01000013
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
46212
46302
+
Ser
TGA
[ENA]
¡û
>C191131102
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1055825
1055915
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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