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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189915 (94 seq.)
>W1711009599
LQQU01000026
Betaproteobacteria
Crenobacter luteus [LQQU]
1759
1835
+
Ile
GAT
[ENA]
¡û
>W1712110326
NJGV01000018
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
3591
3515
-
Ile
GAT
[ENA]
¡û
>C171094895
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
428366
428442
+
Ile
GAT
-
¡û
>C171094932
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
3440800
3440724
-
Ile
GAT
-
¡û
>C171094936
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2668114
2668038
-
Ile
GAT
-
¡û
>C171094938
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2471548
2471472
-
Ile
GAT
-
¡û
>C171094945
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2141086
2141010
-
Ile
GAT
-
¡û
>WENV180284334
OBID01030561
[OBID] metagenome; sludge
312
388
+
Ile
GAT
[ENA]
¢þ
>WENV180299292
OBJC01000448
[OBJC] metagenome; water
921
997
+
Ile
GAT
[ENA]
¢þ
>WENV180315470
OBKH01102236
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
245
169
-
Ile
GAT
[ENA]
¢þ
>WENV180342391
OBLJ01014148
[OBLJ] soil metagenome; Clay
97
173
+
Ile
GAT
[ENA]
¢þ
>WENV180647885
OCSI01019166
[OCSI] metagenome; diffuse fluid
189
265
+
Ile
GAT
[ENA]
¢þ
>WENV181209478
OFBE01004168
[OFBE] metagenome; hydrothermal vent
187
263
+
Ile
GAT
[ENA]
¢þ
>WENV181210655
OFBH01019395
[OFBH] metagenome; hydrothermal vent
137
213
+
Ile
GAT
[ENA]
¢þ
>WENV181293842
OFHG01029449
[OFHG] soil metagenome; Clay
280
356
+
Ile
GAT
[ENA]
¢þ
>WENV181297754
OFHK01123467
[OFHK] soil metagenome; Clay
100
176
+
Ile
GAT
[ENA]
¢þ
>WENV181309616
OFIW01013648
[OFIW] marine metagenome; seawater
332
408
+
Ile
GAT
[ENA]
¢þ
>WENV181315466
OFJP01000071
[OFJP] marine metagenome; seawater
2547
2471
-
Ile
GAT
[ENA]
¢þ
>WENV181378348
OFRB01001094
[OFRB] wastewater metagenome; Exp Tend CN 0WW
2451
2527
+
Ile
GAT
[ENA]
¢þ
>WENV181378825
OFRC01000862
[OFRC] wastewater metagenome; Exp Tend CN 10WW
449
525
+
Ile
GAT
[ENA]
¢þ
>WENV181380436
OFRD01090331
[OFRD] wastewater metagenome; Exp Tend CN 100WW
363
439
+
Ile
GAT
[ENA]
¢þ
>WENV181381661
OFRF01001306
[OFRF] wastewater metagenome; Exp Tend CN 50WW
2581
2505
-
Ile
GAT
[ENA]
¢þ
>WENV181844676
OGVW01017701
[OGVW] freshwater metagenome; freshwater
247
323
+
Ile
GAT
[ENA]
¢þ
>WENV181848374
OGVZ01006201
[OGVZ] freshwater metagenome; freshwater
206
130
-
Ile
GAT
[ENA]
¢þ
>W141216163
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
455696
455772
+
Ile
GAT
[ENA]
¡û
>W141216172
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
1712032
1712108
+
Ile
GAT
[ENA]
¡û
>W141216199
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
4153277
4153201
-
Ile
GAT
[ENA]
¡û
>W141216201
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
4116752
4116676
-
Ile
GAT
[ENA]
¡û
>W141216206
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
3519995
3519919
-
Ile
GAT
[ENA]
¡û
>W141216214
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
3208903
3208827
-
Ile
GAT
[ENA]
¡û
>W141216216
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
3123015
3122939
-
Ile
GAT
[ENA]
¡û
>WENV183060064
OLHW01007541
[OLHW] seawater metagenome; Sea water
255
331
+
Ile
GAT
[ENA]
¢þ
>WENV183703705
PDVJ01037001
[PDVJ] alkali sediment metagenome; glacial lake sediment
313
389
+
Ile
GAT
[ENA]
¢þ
>WENV183735209
PJUA01003097
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1955
2031
+
Ile
GAT
[ENA]
¢þ
>WENV170303923
CESI01003651
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117
193
+
Ile
GAT
[ENA]
¢þ
>WENV170306285
CESJ01020571
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
114
190
+
Ile
GAT
[ENA]
¢þ
>WENV170325354
CEST01013442
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
240
316
+
Ile
GAT
[ENA]
¢þ
>WENV170495870
CEVS01004979
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
911
835
-
Ile
GAT
[ENA]
¢þ
>WENV170557695
CXWL01034333
[CXWL] groundwater metagenome; biofilm material
195
271
+
Ile
GAT
[ENA]
¢þ
>WENV170661757
JXWV01109564
[JXWV] soil metagenome; rice field; organic FYM Plot
364
288
-
Ile
GAT
[ENA]
¢þ
>WENV170669107
LAHR01009683
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
111
187
+
Ile
GAT
[ENA]
¢þ
>C181187747
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
5594045
5594121
+
Ile
GAT
-
¡û
>C181187749
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
5618850
5618926
+
Ile
GAT
-
¡û
>C181187762
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
4443269
4443193
-
Ile
GAT
-
¡û
>C181187764
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
4432580
4432504
-
Ile
GAT
-
¡û
>C181187766
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
4407671
4407595
-
Ile
GAT
-
¡û
>C181187769
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
3761411
3761335
-
Ile
GAT
-
¡û
>C181187772
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
2775115
2775039
-
Ile
GAT
-
¡û
>C191004586
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
2624493
2624417
-
Ile
GAT
-
¡û
>C191004599
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
1631907
1631831
-
Ile
GAT
-
¡û
>C191004603
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
1497364
1497288
-
Ile
GAT
-
¡û
>C191083661
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
164257
164333
+
Ile
GAT
-
¡û
>C191083674
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
1184329
1184405
+
Ile
GAT
-
¡û
>C191083729
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
3545316
3545240
-
Ile
GAT
-
¡û
>W09125844
ACIS01000017
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
29348
29272
-
Ile
GAT
[ENA]
¡û
>W09134971
ACVF01000013
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
1913
1989
+
Ile
GAT
[ENA]
¡û
>W141817322
JQKP01000002
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
400906
400982
+
Ile
GAT
[ENA]
¡û
>W141817341
JQKP01000012
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
82977
82901
-
Ile
GAT
[ENA]
¡û
>W141817349
JQKP01000018
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
3594
3518
-
Ile
GAT
[ENA]
¡û
>W141817351
JQKP01000019
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
1960
2036
+
Ile
GAT
[ENA]
¡û
>W1910647308
LXRL01000051
Betaproteobacteria
Chromobacterium haemolyticum IR17 [LXRL]
3508
3432
-
Ile
GAT
[ENA]
¡û
>W1911802720
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
393059
393135
+
Ile
GAT
[ENA]
¡û
>W1911802751
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
3299893
3299817
-
Ile
GAT
[ENA]
¡û
>W1911802768
QYUN01000003
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
618192
618268
+
Ile
GAT
[ENA]
¡û
>W1810659771
QJKI01000043
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
3719
3643
-
Ile
GAT
[ENA]
¡û
>W1810887540
QUQN01000010
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
2104
2180
+
Ile
GAT
[ENA]
¡û
>C151092610
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
5007740
5007816
+
Ile
GAT
-
¡û
>C151092612
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
5015658
5015734
+
Ile
GAT
-
¡û
>C151092614
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
5021812
5021888
+
Ile
GAT
-
¡û
>C151092633
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
3730261
3730185
-
Ile
GAT
-
¡û
>C151092635
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
3704914
3704838
-
Ile
GAT
-
¡û
>C151092637
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
3677606
3677530
-
Ile
GAT
-
¡û
>C151092640
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
2827099
2827023
-
Ile
GAT
-
¡û
>SRA1046226
SRR035093.257246
454 Sequencing (SRP001814)
80
156
+
Ile
GAT
[SRA]
>SRA1046955
SRR035093.425556
454 Sequencing (SRP001814)
191
267
+
Ile
GAT
[SRA]
>W1510017320
BBTH01000019
Betaproteobacteria
Ferriphaselus amnicola OYT1 [BBTH]
1924
2000
+
Ile
GAT
[ENA]
¡û
>W10111520
ADDK01000038
Betaproteobacteria
Azospira oryzae PS [ADDK]
222
146
-
Ile
GAT
[ENA]
¡û
>C10107797
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
521296
521372
+
Ile
GAT
[Ensembl]
¡û
>C10107818
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
5431774
5431698
-
Ile
GAT
[Ensembl]
¡û
>C10107823
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
4446483
4446407
-
Ile
GAT
[Ensembl]
¡û
>C10111851
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
359045
359121
+
Ile
GAT
[Ensembl]
¡û
>C10111880
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
1926700
1926624
-
Ile
GAT
[Ensembl]
¡û
>W1511640617
LDUI01000087
Betaproteobacteria
Chromobacterium sp. LK1 [LDUI]
399
323
-
Ile
GAT
[ENA]
¡û
>W1511641321
LDUR01000069
Betaproteobacteria
Chromobacterium sp. LK11 [LDUR]
358
282
-
Ile
GAT
[ENA]
¡û
>W1511678899
LFDT01000055
Betaproteobacteria
Vogesella sp. EB [LFDT]
3532
3456
-
Ile
GAT
[ENA]
¡û
>C121000511
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
459149
459225
+
Ile
GAT
[Ensembl]
¡û
>C121000520
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
1690226
1690302
+
Ile
GAT
[Ensembl]
¡û
>C121000550
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
4151278
4151202
-
Ile
GAT
[Ensembl]
¡û
>C121000552
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
4119936
4119860
-
Ile
GAT
[Ensembl]
¡û
>C121000557
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3584227
3584151
-
Ile
GAT
[Ensembl]
¡û
>C121000569
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3295614
3295538
-
Ile
GAT
[Ensembl]
¡û
>C121000571
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
3212419
3212343
-
Ile
GAT
[Ensembl]
¡û
>C121000575
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
2883380
2883304
-
Ile
GAT
[Ensembl]
¡û
>W1610858119
LQQU01000026
Betaproteobacteria
Crenobacter luteus [LQQU]
1759
1835
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK