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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190060 (18 seq.)
>WENV180739605
ODHE01000053
[ODHE] human metagenome; G_DNA_Stool
128194
128118
-
Ile2
CAT
[ENA]
¢þ
>WENV180915037
ODTB01000052
[ODTB] human metagenome; G_DNA_Stool
106974
106898
-
Ile2
CAT
[ENA]
¢þ
>WENV180960942
ODUN01000090
[ODUN] human metagenome; G_DNA_Stool
38208
38132
-
Ile2
CAT
[ENA]
¢þ
>WENV181023003
ODWX01000031
[ODWX] human metagenome; G_DNA_Stool
21290
21214
-
Ile2
CAT
[ENA]
¢þ
>WENV181355015
OFMT01000257
[OFMT] human gut metagenome; human gut
10101
10177
+
Ile2
CAT
[ENA]
¢þ
>WENV181662800
OGOH01001231
[OGOH] human gut metagenome; faeces
6322
6398
+
Ile2
CAT
[ENA]
¢þ
>WENV182017721
OHBW01002042
[OHBW] human gut metagenome; feces
6800
6724
-
Ile2
CAT
[ENA]
¢þ
>WENV182051508
OHEG01001041
[OHEG] human gut metagenome; feces
11451
11375
-
Ile2
CAT
[ENA]
¢þ
>WENV182170311
OHMW01000006
[OHMW] human gut metagenome; feces
95512
95588
+
Ile2
CAT
[ENA]
¢þ
>WENV182174250
OHNF01000029
[OHNF] human gut metagenome; feces
42448
42372
-
Ile2
CAT
[ENA]
¢þ
>WENV182241699
OHSG01000464
[OHSG] human gut metagenome; feces
1192
1116
-
Ile2
CAT
[ENA]
¢þ
>WENV182249640
OHSQ01002953
[OHSQ] human gut metagenome; feces
714
790
+
Ile2
CAT
[ENA]
¢þ
>WENV182681909
OJNV01029102
[OJNV] human gut metagenome; human gut
1
77
+
Ile2
CAT
[ENA]
¢þ
>WENV182893174
OKSK01000010
[OKSK] human gut metagenome; feces
27907
27831
-
Ile2
CAT
[ENA]
¢þ
>WENV182916833
OKTU01000011
[OKTU] human gut metagenome; feces
95512
95588
+
Ile2
CAT
[ENA]
¢þ
>WENV183607007
OODO01000731
[OODO] human gut metagenome; human gut
25785
25861
+
Ile2
CAT
[ENA]
¢þ
>WENV183766525
PPYE01356939
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
18094
18018
-
Ile2
CAT
[ENA]
¢þ
>W1810874481
QUFG01000005
Bacillota
Faecalibacterium sp. AF28-13AC [QUFG]
106649
106573
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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