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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190198 (16 seq.)
>WENV180022327
FTFY01000871
[FTFY] metagenome; soil
37457
37381
-
Gln
TTG
[ENA]
¢þ
>WENV180026550
FTIU01002197
[FTIU] metagenome; soil
3225
3301
+
Gln
TTG
[ENA]
¢þ
>WENV180270448
OBEQ012172153
[OBEQ] groundwater metagenome; groundwater
1092
1168
+
Gln
TTG
[ENA]
¢þ
>WENV181384146
OFRH01024028
[OFRH] wastewater metagenome; Exp Tend NO 100WW
466
542
+
Gln
TTG
[ENA]
¢þ
>WENV183744191
PJUK01001528
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1736
1812
+
Gln
TTG
[ENA]
¢þ
>WENV170606409
FUWD010666227
[FUWD] metagenome; unknown
455
379
-
Gln
TTG
[ENA]
¢þ
>C141001534
CP003468
Betaproteobacteria
Candidatus Profftella armatura DC [CP003468]
226725
226650
-
Gln
TTG
[Ensembl]
¡û
>W1911572389
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3113905
3113829
-
Gln
TTG
[ENA]
¡û
>W1911647607
QAJP01000005
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
252810
252734
-
Gln
TTG
[ENA]
¡û
>C151062627
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
751519
751443
-
Gln
TTG
[Ensembl]
¡û
>C151095982
CP012591
Betaproteobacteria
Candidatus Profftella armatura YCPA [CP012591]
225801
225726
-
Gln
TTG
-
¡û
>C161053621
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
927970
927894
-
Gln
TTG
[Ensembl]
¡û
>C161053716
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
741366
741290
-
Gln
TTG
[Ensembl]
¡û
>C161053814
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
679471
679395
-
Gln
TTG
[Ensembl]
¡û
>W1710557530
FOLC01000004
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
208816
208740
-
Gln
TTG
[ENA]
¡û
>W1710564215
FOQI01000005
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
234874
234798
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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