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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190540 (20 seq.)
>WENV181628923
OGMO01027400
[OGMO] metagenome; Human gut stool
488
561
+
Ile
TAT
[ENA]
¢þ
>WENV181919947
OGYI01006089
[OGYI] human gut metagenome; faeces
3332
3259
-
Ile
TAT
[ENA]
¢þ
>WENV181976366
OHAD01000921
[OHAD] human gut metagenome; faeces
26527
26454
-
Ile
TAT
[ENA]
¢þ
>WENV182009826
OHBJ01055437
[OHBJ] human gut metagenome; faeces
949
876
-
Ile
TAT
[ENA]
¢þ
>WENV182437529
OIJJ01007149
[OIJJ] human gut metagenome; human gut
561
488
-
Ile
TAT
[ENA]
¢þ
>WENV182441166
OIKC01001414
[OIKC] human gut metagenome; human gut
1911
1838
-
Ile
TAT
[ENA]
¢þ
>WENV182441839
OIKE01002205
[OIKE] human gut metagenome; human gut
422
495
+
Ile
TAT
[ENA]
¢þ
>WENV182453979
OIML01000183
[OIML] human gut metagenome; human gut
1064
1137
+
Ile
TAT
[ENA]
¢þ
>WENV182454506
OIMM01006297
[OIMM] human gut metagenome; human gut
563
490
-
Ile
TAT
[ENA]
¢þ
>WENV182458523
OINI01009456
[OINI] human gut metagenome; human gut
601
674
+
Ile
TAT
[ENA]
¢þ
>WENV182458759
OINJ01001007
[OINJ] human gut metagenome; human gut
4332
4259
-
Ile
TAT
[ENA]
¢þ
>WENV182461361
OINS01004455
[OINS] human gut metagenome; human gut
107
180
+
Ile
TAT
[ENA]
¢þ
>WENV182465958
OIOO01002304
[OIOO] human gut metagenome; human gut
1223
1296
+
Ile
TAT
[ENA]
¢þ
>WENV182474035
OIPU01013672
[OIPU] human gut metagenome; human gut
402
475
+
Ile
TAT
[ENA]
¢þ
>WENV182930212
OKUQ01057958
[OKUQ] human gut metagenome; feces
289
362
+
Ile
TAT
[ENA]
¢þ
>WENV182990090
OLAL01005057
[OLAL] human gut metagenome; human gut
1124
1197
+
Ile
TAT
[ENA]
¢þ
>WENV182991787
OLAR01005635
[OLAR] human gut metagenome; human gut
496
423
-
Ile
TAT
[ENA]
¢þ
>WENV183003659
OLCT01001800
[OLCT] human gut metagenome; human gut
108
181
+
Ile
TAT
[ENA]
¢þ
>WENV183525998
ONZU01015208
[ONZU] human gut metagenome; human gut
760
833
+
Ile
TAT
[ENA]
¢þ
>WENV183784681
PPYF01267305
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17479
17404
-
Ile
TAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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