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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191061 (27 seq.)
>W131229270
AUGR01000007
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
56065
56141
+
Arg
ACG
[ENA]
¡û
>WENV181309529
OFIW01003807
[OFIW] marine metagenome; seawater
843
767
-
Arg
ACG
[ENA]
¢þ
>WENV181313846
OFJH01013358
[OFJH] marine metagenome; seawater
109
33
-
Arg
ACG
[ENA]
¢þ
>WENV181392537
OFRW01076647
[OFRW] seawater metagenome; seawater
407
483
+
Arg
ACG
[ENA]
¢þ
>WENV182548336
OJBV01017542
[OJBV] seawater metagenome; Sea water
633
709
+
Arg
ACG
[ENA]
¢þ
>WENV182550678
OJCA01026817
[OJCA] seawater metagenome; Sea water
371
447
+
Arg
ACG
[ENA]
¢þ
>WENV182563545
OJEC01002522
[OJEC] seawater metagenome; Sea water
2271
2347
+
Arg
ACG
[ENA]
¢þ
>WENV182570315
OJFC01001746
[OJFC] seawater metagenome; Sea water
3238
3314
+
Arg
ACG
[ENA]
¢þ
>WENV182577816
OJGJ01000553
[OJGJ] seawater metagenome; Sea water
254
178
-
Arg
ACG
[ENA]
¢þ
>WENV182583911
OJHF01000598
[OJHF] seawater metagenome; Sea water
691
615
-
Arg
ACG
[ENA]
¢þ
>WENV182587169
OJHL01005679
[OJHL] seawater metagenome; Sea water
107
31
-
Arg
ACG
[ENA]
¢þ
>WENV183055095
OLGW01007508
[OLGW] seawater metagenome; Sea water
619
543
-
Arg
ACG
[ENA]
¢þ
>WENV183058558
OLHR01001138
[OLHR] seawater metagenome; Sea water
4024
4100
+
Arg
ACG
[ENA]
¢þ
>WENV183620086
OOFR01004714
[OOFR] marine metagenome; seawater
791
867
+
Arg
ACG
[ENA]
¢þ
>WENV183620518
OOFS01000747
[OOFS] marine metagenome; sea ice
759
683
-
Arg
ACG
[ENA]
¢þ
>WENV183620850
OOFS01056898
[OOFS] marine metagenome; sea ice
492
416
-
Arg
ACG
[ENA]
¢þ
>WENV170568443
FLMP01040359
[FLMP] seawater metagenome; seawater
524
600
+
Arg
ACG
[ENA]
¢þ
>WENV170569679
FLMP01267979
[FLMP] seawater metagenome; seawater
66
142
+
Arg
ACG
[ENA]
¢þ
>WENV170918992
MDTF01005210
[MDTF] marine metagenome; seawater
4115
4191
+
Arg
ACG
[ENA]
¢þ
>WENV170950010
MEHZ011470428
[MEHZ] marine metagenome; marine surface water
496
572
+
Arg
ACG
[ENA]
¢þ
>WENV170952744
MEHZ011612569
[MEHZ] marine metagenome; marine surface water
1979
1903
-
Arg
ACG
[ENA]
¢þ
>C161000665
AP014635
Gammaproteobacteria
Vibrio tritonius JCM 16456 [AP014635]
542670
542746
+
Arg
ACG
-
¡û
>C161000667
AP014635
Gammaproteobacteria
Vibrio tritonius JCM 16456 [AP014635]
542944
543020
+
Arg
ACG
-
¡û
>C161000668
AP014635
Gammaproteobacteria
Vibrio tritonius JCM 16456 [AP014635]
543106
543182
+
Arg
ACG
-
¡û
>C161000669
AP014635
Gammaproteobacteria
Vibrio tritonius JCM 16456 [AP014635]
543265
543341
+
Arg
ACG
-
¡û
>C161000670
AP014635
Gammaproteobacteria
Vibrio tritonius JCM 16456 [AP014635]
543423
543499
+
Arg
ACG
-
¡û
>C161000671
AP014635
Gammaproteobacteria
Vibrio tritonius JCM 16456 [AP014635]
543582
543658
+
Arg
ACG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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