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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191064 (91 seq.)
>W1710796659
LJSH01000002
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
196183
196107
-
Arg
CCG
[ENA]
¡û
>W1710989575
LPWA01000105
Alphaproteobacteria
Mesorhizobium loti [LPWA]
7275
7351
+
Arg
CCG
[ENA]
¡û
>W1710989821
LPWE01000010
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
174932
174856
-
Arg
CCG
[ENA]
¡û
>W1710989910
LPWG01000010
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
84214
84290
+
Arg
CCG
[ENA]
¡û
>W1711257254
LYTM01000030
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
3993
3917
-
Arg
CCG
[ENA]
¡û
>W1711353197
MDDT01000089
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
553836
553912
+
Arg
CCG
[ENA]
¡û
>W1711353203
MDDU01000001
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
418825
418749
-
Arg
CCG
[ENA]
¡û
>W1711354756
MDFL01000138
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
45482
45558
+
Arg
CCG
[ENA]
¡û
>W1711386044
MEEV01000046
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
5737
5661
-
Arg
CCG
[ENA]
¡û
>W131162086
AQYH01000004
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
115508
115584
+
Arg
CCG
[ENA]
¡û
>w022235
AAWJ01000001
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [AAWJ]
1190144
1190220
+
Arg
CCG
[ENA]
¡û
>WENV180108918
OAPI01026240
[OAPI] marine metagenome; ENVO.00002150
80
156
+
Arg
CCG
[ENA]
¢þ
>WENV180358252
OBNP01016353
[OBNP] marine metagenome; seawater
296
372
+
Arg
CCG
[ENA]
¢þ
>WENV180361949
OBNW01012339
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
459
383
-
Arg
CCG
[ENA]
¢þ
>WENV180586599
OCOM01148535
[OCOM] marine metagenome; seawater
128
54
-
Arg
CCG
[ENA]
¢þ
>WENV180587135
OCON01055961
[OCON] marine metagenome; seawater
243
319
+
Arg
CCG
[ENA]
¢þ
>WENV180592720
OCOW01043043
[OCOW] marine metagenome; Sterivex cartridges
333
257
-
Arg
CCG
[ENA]
¢þ
>WENV180635605
OCRD01084113
[OCRD] marine metagenome; seawater
184
108
-
Arg
CCG
[ENA]
¢þ
>W08004029
ABHC01000017
Alphaproteobacteria
alpha proteobacterium BAL199 [ABHC]
72012
72088
+
Arg
CCG
[ENA]
¡û
>WENV181163508
OEIQ01060510
[OEIQ] soil metagenome; soil
209
285
+
Arg
CCG
[ENA]
¢þ
>WENV181233582
OFET01000010
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
196179
196103
-
Arg
CCG
[ENA]
¢þ
>WENV181234201
OFEU01000003
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
613188
613112
-
Arg
CCG
[ENA]
¢þ
>WENV181309420
OFIV01014034
[OFIV] marine metagenome; seawater
7
83
+
Arg
CCG
[ENA]
¢þ
>WENV181392190
OFRW01008880
[OFRW] seawater metagenome; seawater
127
203
+
Arg
CCG
[ENA]
¢þ
>C08007364
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
112869
112796
-
Arg
CCG
[Ensembl]
¡û
>W141235995
BAYV01000102
Alphaproteobacteria
alpha proteobacterium Q-1 [BAYV]
38523
38447
-
Arg
CCG
[ENA]
¡û
>WENV182563673
OJEC01012521
[OJEC] seawater metagenome; Sea water
862
938
+
Arg
CCG
[ENA]
¢þ
>WENV182571800
OJFK01012593
[OJFK] seawater metagenome; Sea water
586
662
+
Arg
CCG
[ENA]
¢þ
>W141266681
CCMY01000069
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
10335
10411
+
Arg
CCG
[ENA]
¡û
>W141266740
CCMZ01000059
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
21317
21241
-
Arg
CCG
[ENA]
¡û
>W141266775
CCNA01000023
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
1347
1423
+
Arg
CCG
[ENA]
¡û
>W141266821
CCNB01000016
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
108762
108686
-
Arg
CCG
[ENA]
¡û
>W141266845
CCNC01000020
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
2266
2342
+
Arg
CCG
[ENA]
¡û
>WENV183055926
OLHH01007194
[OLHH] seawater metagenome; Sea water
1032
1108
+
Arg
CCG
[ENA]
¢þ
>WENV183058677
OLHR01004356
[OLHR] seawater metagenome; Sea water
1279
1203
-
Arg
CCG
[ENA]
¢þ
>WENV183616525
OOED01062755
[OOED] marine metagenome; seawater
208
132
-
Arg
CCG
[ENA]
¢þ
>WENV183626911
OOGK01009223
[OOGK] marine metagenome; seawater
127
203
+
Arg
CCG
[ENA]
¢þ
>WENV183629788
OOGQ01008550
[OOGQ] marine metagenome; seawater
267
343
+
Arg
CCG
[ENA]
¢þ
>WENV183687862
ORMF011200706
[ORMF] groundwater metagenome; groundwater
46
122
+
Arg
CCG
[ENA]
¢þ
>WENV183732829
PJTX01019547
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
418
494
+
Arg
CCG
[ENA]
¢þ
>WENV183737292
PJUD01003018
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3730
3806
+
Arg
CCG
[ENA]
¢þ
>WENV183739985
PJUF01000114
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
74730
74654
-
Arg
CCG
[ENA]
¢þ
>WENV183744908
PJUL01000600
[PJUL] feces metagenome; Chicken feces enriched on filter paper
17834
17910
+
Arg
CCG
[ENA]
¢þ
>WENV170133519
CENU01030780
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1453
1377
-
Arg
CCG
[ENA]
¢þ
>WENV170567286
FLLY01114294
[FLLY] seawater metagenome; seawater
208
132
-
Arg
CCG
[ENA]
¢þ
>WENV170570703
FLOH01000016
[FLOH] marine metagenome; water
178621
178545
-
Arg
CCG
[ENA]
¢þ
>WENV170606078
FUWD010602711
[FUWD] metagenome; unknown
271
195
-
Arg
CCG
[ENA]
¢þ
>WENV170672455
LAZR01000182
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
297
221
-
Arg
CCG
[ENA]
¢þ
>WENV170781857
MAAC01002574
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
295
219
-
Arg
CCG
[ENA]
¢þ
>WENV170864944
MDTB01112547
[MDTB] marine metagenome; seawater
73
-1
-
Arg
CCG
[ENA]
¢þ
>WENV170871639
MDTB01208479
[MDTB] marine metagenome; seawater
32
108
+
Arg
CCG
[ENA]
¢þ
>WENV170871861
MDTB01211287
[MDTB] marine metagenome; seawater
11766
11690
-
Arg
CCG
[ENA]
¢þ
>WENV170949917
MEHZ011464479
[MEHZ] marine metagenome; marine surface water
1
77
+
Arg
CCG
[ENA]
¢þ
>WENV170950575
MEHZ011504174
[MEHZ] marine metagenome; marine surface water
854
930
+
Arg
CCG
[ENA]
¢þ
>WENV170953090
MEHZ011628320
[MEHZ] marine metagenome; marine surface water
787
711
-
Arg
CCG
[ENA]
¢þ
>C181155061
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
580661
580737
+
Arg
CCG
-
¡û
>C181155111
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
580661
580737
+
Arg
CCG
-
¡û
>C181170890
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
1383932
1383856
-
Arg
CCG
-
¡û
>C191015712
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
217093
217017
-
Arg
CCG
-
¡û
>C191018784
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
22571
22647
+
Arg
CCG
-
¡û
>C191081608
CP031841
Alphaproteobacteria
Breoghania sp. L-A4 [CP031841]
3716226
3716302
+
Arg
CCG
-
¡û
>C191090919
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
2008220
2008296
+
Arg
CCG
-
¡û
>C191125527
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
3139270
3139346
+
Arg
CCG
-
¡û
>C191125772
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
2706972
2707048
+
Arg
CCG
-
¡û
>C191125830
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
3143324
3143400
+
Arg
CCG
-
¡û
>C191185619
CP041025
Alphaproteobacteria
Paremcibacter congregatus ZYLT [CP041025]
1530586
1530510
-
Arg
CCG
-
¡û
>W1911242465
NSFT01000007
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
184719
184643
-
Arg
CCG
[ENA]
¡û
>W1911242732
NSFZ01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
37250
37326
+
Arg
CCG
[ENA]
¡û
>W1911242780
NSGA01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
151865
151941
+
Arg
CCG
[ENA]
¡û
>W1911242823
NSGB01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
334823
334747
-
Arg
CCG
[ENA]
¡û
>W1911242982
NSGE01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
302213
302137
-
Arg
CCG
[ENA]
¡û
>W1911243025
NSGF01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
276485
276561
+
Arg
CCG
[ENA]
¡û
>W1911695541
QMBQ01000005
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
655582
655506
-
Arg
CCG
[ENA]
¡û
>SRA1001738
SRR001308.22212
Metagenomic characterization of a wastewater treatment plant (SRP000180)
174
98
-
Arg
CCG
[SRA]
>W1810053676
PDEM01000009
Alphaproteobacteria
Paremcibacter congregatus ZYL [PDEM]
631613
631537
-
Arg
CCG
[ENA]
¡û
>W1810570003
QEHM01000001
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
875022
875098
+
Arg
CCG
[ENA]
¡û
>W1810624964
QHHQ01000008
Alphaproteobacteria
Acuticoccus sediminis PTG4-2 [QHHQ]
281275
281199
-
Arg
CCG
[ENA]
¡û
>W1810667432
QJPK01000010
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
1038
962
-
Arg
CCG
[ENA]
¡û
>W1810685925
QKZQ01000015
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
75290
75366
+
Arg
CCG
[ENA]
¡û
>C151002847
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
619143
619219
+
Arg
CCG
[Ensembl]
¡û
>C151101073
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
1825534
1825458
-
Arg
CCG
[Ensembl]
¡û
>WENV042011
AACY022205593
Marine microbial communities from Global Ocean Sampling (GOS)
638
562
-
Arg
CCG
[ENA]
>W1511541918
JZEX01000022
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
38639
38563
-
Arg
CCG
[ENA]
¡û
>W1511541993
JZEY01000061
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1118229
1118153
-
Arg
CCG
[ENA]
¡û
>W1610660616
LJSH01000002
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
196183
196107
-
Arg
CCG
[ENA]
¡û
>W1610844451
LPWA01000105
Alphaproteobacteria
Mesorhizobium loti [LPWA]
7275
7351
+
Arg
CCG
[ENA]
¡û
>W1611020230
LYTM01000030
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
3993
3917
-
Arg
CCG
[ENA]
¡û
>W1710528159
FNMZ01000002
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
796610
796686
+
Arg
CCG
[ENA]
¡û
>W1710529847
FNOI01000001
Alphaproteobacteria
Litoreibacter albidus [FNOI]
978810
978734
-
Arg
CCG
[ENA]
¡û
>W1710571231
FOVT01000001
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
93494
93418
-
Arg
CCG
[ENA]
¡û
>W1710582195
FPKU01000004
Alphaproteobacteria
Devosia enhydra [FPKU]
310740
310816
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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