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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191455 (85 seq.)
>W1711009410
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
89332
89256
-
Pro
TGG
[ENA]
¡û
>W131046705
AMSP01000001
Actinomycetota
Brevibacterium casei S18 [AMSP]
510698
510622
-
Pro
TGG
[ENA]
¡û
>C171057877
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1936935
1936859
-
Pro
TGG
-
¡û
>WENV180108836
OAPI01003821
[OAPI] marine metagenome; ENVO.00002150
369
443
+
Pro
TGG
[ENA]
¢þ
>w005569
AAGP01000026
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
43964
43891
-
Pro
TGG
[ENA]
¡û
>WENV180362337
OBNW01121173
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
16
90
+
Pro
TGG
[ENA]
¢þ
>WENV180377726
OBON01100803
[OBON] marine metagenome; sea water
20
94
+
Pro
TGG
[ENA]
¢þ
>WENV180394819
OBPS01097090
[OBPS] marine metagenome; ENVO:00002010 seawater
149
223
+
Pro
TGG
[ENA]
¢þ
>WENV180399154
OBQG01002470
[OBQG] marine metagenome; ENV:00002010
202
276
+
Pro
TGG
[ENA]
¢þ
>WENV180399299
OBQH01000948
[OBQH] marine metagenome; ENV:00002010
724
650
-
Pro
TGG
[ENA]
¢þ
>WENV180399501
OBQO01000018
[OBQO] marine metagenome; ENVO:00002010
14939
15013
+
Pro
TGG
[ENA]
¢þ
>WENV180650231
OCSY01000273
[OCSY] marine metagenome; 30 L Plastic container
391
317
-
Pro
TGG
[ENA]
¢þ
>WENV181320998
OFKJ01008000
[OFKJ] marine metagenome; sea ice
281
355
+
Pro
TGG
[ENA]
¢þ
>WENV181322118
OFKP01007891
[OFKP] marine metagenome; sea ice
351
277
-
Pro
TGG
[ENA]
¢þ
>WENV181322669
OFKT01015525
[OFKT] marine metagenome; sea ice
160
86
-
Pro
TGG
[ENA]
¢þ
>WENV181323501
OFKY01002212
[OFKY] marine metagenome; sea ice
1161
1087
-
Pro
TGG
[ENA]
¢þ
>WENV181324146
OFLC01000611
[OFLC] marine metagenome; melt pond
2064
2138
+
Pro
TGG
[ENA]
¢þ
>WENV181324403
OFLE01004651
[OFLE] marine metagenome; sea ice
151
225
+
Pro
TGG
[ENA]
¢þ
>WENV181324565
OFLF01002939
[OFLF] marine metagenome; melt pond
714
640
-
Pro
TGG
[ENA]
¢þ
>WENV181324750
OFLH01001750
[OFLH] marine metagenome; sea ice
964
890
-
Pro
TGG
[ENA]
¢þ
>WENV181325209
OFLI01017573
[OFLI] seawater metagenome; seawater
664
590
-
Pro
TGG
[ENA]
¢þ
>WENV181392732
OFRX01003415
[OFRX] seawater metagenome; seawater
835
761
-
Pro
TGG
[ENA]
¢þ
>W141282877
JAJB01000007
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
60397
60471
+
Pro
TGG
[ENA]
¡û
>WENV183511407
OMJG01000206
[OMJG] food metagenome; Cotija cheese
279
205
-
Pro
TGG
[ENA]
¢þ
>WENV183615034
OOEA01034010
[OOEA] marine metagenome; sea ice
101
27
-
Pro
TGG
[ENA]
¢þ
>WENV183618657
OOFO01017823
[OOFO] marine metagenome; seawater
664
590
-
Pro
TGG
[ENA]
¢þ
>WENV183620888
OOFT01000007
[OOFT] marine metagenome; sea ice
48714
48788
+
Pro
TGG
[ENA]
¢þ
>WENV183629090
OOGP01003311
[OOGP] marine metagenome; seawater
835
761
-
Pro
TGG
[ENA]
¢þ
>WENV170567672
FLMP01003432
[FLMP] seawater metagenome; seawater
2395
2319
-
Pro
TGG
[ENA]
¢þ
>WENV170614495
FUWD012834978
[FUWD] metagenome; unknown
22524
22448
-
Pro
TGG
[ENA]
¢þ
>WENV170951788
MEHZ011569893
[MEHZ] marine metagenome; marine surface water
5832
5908
+
Pro
TGG
[ENA]
¢þ
>C191031880
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
2049232
2049158
-
Pro
TGG
-
¡û
>C191031928
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1924807
1924733
-
Pro
TGG
-
¡û
>C191031976
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1835710
1835636
-
Pro
TGG
-
¡û
>C191032023
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1893027
1892953
-
Pro
TGG
-
¡û
>C191032071
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
2034177
2034103
-
Pro
TGG
-
¡û
>C191046871
CP026734
Actinomycetota
Brevibacterium linens ATCC 19391 [CP026734]
1726402
1726328
-
Pro
TGG
-
¡û
>W1910181643
BJME01000013
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
59792
59718
-
Pro
TGG
[ENA]
¡û
>W1910331276
FSLI01000203
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
6341
6267
-
Pro
TGG
[ENA]
¡û
>W1910499995
FXYX01000007
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
66816
66742
-
Pro
TGG
[ENA]
¡û
>W1910500042
FXYY01000003
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
213817
213743
-
Pro
TGG
[ENA]
¡û
>W1910500101
FXYZ01000010
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
66185
66111
-
Pro
TGG
[ENA]
¡û
>W1910500123
FXZA01000001
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
608399
608473
+
Pro
TGG
[ENA]
¡û
>W1910500188
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
66288
66214
-
Pro
TGG
[ENA]
¡û
>W1910500227
FXZC01000002
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
627971
628045
+
Pro
TGG
[ENA]
¡û
>W1910500302
FXZD01000020
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
22733
22659
-
Pro
TGG
[ENA]
¡û
>W1910500350
FXZE01000044
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
924
850
-
Pro
TGG
[ENA]
¡û
>W1910500408
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
63941
64015
+
Pro
TGG
[ENA]
¡û
>W1910500488
FXZH01000025
Actinomycetota
Brevibacterium sp. 239c [FXZH]
53299
53373
+
Pro
TGG
[ENA]
¡û
>W1910500516
FXZI01000004
Actinomycetota
Brevibacterium aurantiacum [FXZI]
14513
14587
+
Pro
TGG
[ENA]
¡û
>W1910871221
NCWY01000005
Actinomycetota
Brevibacterium casei OG2 [NCWY]
158994
158920
-
Pro
TGG
[ENA]
¡û
>W1911203159
NRGO01000038
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
16104
16178
+
Pro
TGG
[ENA]
¡û
>W1911203195
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
66050
65976
-
Pro
TGG
[ENA]
¡û
>W1911203213
NRGQ01000001
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
65714
65640
-
Pro
TGG
[ENA]
¡û
>W1911203615
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3723458
3723384
-
Pro
TGG
[ENA]
¡û
>W1911203812
NRHA01000012
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
65745
65671
-
Pro
TGG
[ENA]
¡û
>W1911203831
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
167189
167263
+
Pro
TGG
[ENA]
¡û
>W1911696908
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
497959
498033
+
Pro
TGG
[ENA]
¡û
>W1810057048
PDHL01000038
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
131689
131615
-
Pro
TGG
[ENA]
¡û
>W1810721386
QNRZ01000003
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
404466
404392
-
Pro
TGG
[ENA]
¡û
>W1810721480
QNSB01000003
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
404357
404283
-
Pro
TGG
[ENA]
¡û
>W1810756552
QPGC01000034
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
63448
63522
+
Pro
TGG
[ENA]
¡û
>W1810756582
QPGD01000006
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
71655
71729
+
Pro
TGG
[ENA]
¡û
>W1810756638
QPGE01000006
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
395561
395487
-
Pro
TGG
[ENA]
¡û
>SRA1023859
SRR035084.192163
454 Sequencing (SRP001805)
322
246
-
Pro
TGG
[SRA]
>SRA1024421
SRR035084.320024
454 Sequencing (SRP001805)
152
76
-
Pro
TGG
[SRA]
>SRA1025393
SRR035084.578795
454 Sequencing (SRP001805)
9
85
+
Pro
TGG
[SRA]
>SRA1025407
SRR035084.583307
454 Sequencing (SRP001805)
155
231
+
Pro
TGG
[SRA]
>SRA1045759
SRR035093.164550
454 Sequencing (SRP001814)
257
333
+
Pro
TGG
[SRA]
>SRA1045906
SRR035093.195269
454 Sequencing (SRP001814)
321
397
+
Pro
TGG
[SRA]
>SRA1046005
SRR035093.214790
454 Sequencing (SRP001814)
51
127
+
Pro
TGG
[SRA]
>SRA1047180
SRR035093.477010
454 Sequencing (SRP001814)
239
163
-
Pro
TGG
[SRA]
>SRA1053163
SRR035098.351172
454 Sequencing (SRP001819)
169
245
+
Pro
TGG
[SRA]
>W1511402446
JTJZ01000020
Actinomycetota
Brevibacterium linens AE038-8 [JTJZ]
281712
281638
-
Pro
TGG
[ENA]
¡û
>WENV046777
AACY022622452
Marine microbial communities from Global Ocean Sampling (GOS)
250
328
+
Pro
TGG
[ENA]
>C161078922
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
1878716
1878642
-
Pro
TGG
[Ensembl]
¡û
>WENV056730
AACY023263660
Marine microbial communities from Global Ocean Sampling (GOS)
180
258
+
Pro
TGG
[ENA]
>W121063474
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
322080
322004
-
Pro
TGG
[ENA]
¡û
>W1610050881
BBGH01000070
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
6254
6330
+
Pro
TGG
[ENA]
¡û
>W1610069303
BCSJ01000011
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
282276
282202
-
Pro
TGG
[ENA]
¡û
>W1610625716
LIBA01000008
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
4905
4981
+
Pro
TGG
[ENA]
¡û
>W1610857930
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
89332
89256
-
Pro
TGG
[ENA]
¡û
>W1710047280
BBGH01000070
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
6254
6330
+
Pro
TGG
[ENA]
¡û
>W1710066676
BCSJ01000011
Actinomycetota
Brevibacterium epidermidis NBRC 14811 [BCSJ]
282276
282202
-
Pro
TGG
[ENA]
¡û
>W1710756843
LIBA01000008
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
4905
4981
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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