This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.191833 (17 seq.)
>W1711503599
MKTT01000076
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
34224
34298
+
Asp
GTC
[ENA]
¡û
>C171089096
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
5963191
5963265
+
Asp
GTC
-
¡û
>C171089097
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
5963364
5963438
+
Asp
GTC
-
¡û
>WENV180692746
OCZS010736190
[OCZS] soil metagenome; soil
29
103
+
Asp
GTC
[ENA]
¢þ
>WENV183725813
PJQF01019950
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
710
636
-
Asp
GTC
[ENA]
¢þ
>WENV170002695
AGTN01103705
[AGTN] bioreactor metagenome; poplar biomass
133
208
+
Asp
GTC
[ENA]
¢þ
>WENV170649223
JRHI01011058
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2179
2253
+
Asp
GTC
[ENA]
¢þ
>WENV170714812
LNFM01103958
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1173
1249
+
Asp
GTC
[ENA]
¢þ
>C11111461
CP002353
Planctomycetota
Isosphaera pallida ATCC 43644 [CP002353]
1515737
1515811
+
Asp
GTC
[Ensembl]
¡û
>C161033430
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
1572021
1572097
+
Asp
GTC
-
¡û
>W121017692
AGRX01000110
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
385634
385559
-
Asp
GTC
[ENA]
¡û
>W121044523
AHZQ01000134
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AHZQ]
38731
38656
-
Asp
GTC
[ENA]
¡û
>W121017691
AGRX01000110
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
385800
385726
-
Asp
GTC
[ENA]
¡û
>W121044522
AHZQ01000134
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AHZQ]
38897
38823
-
Asp
GTC
[ENA]
¡û
>C131003506
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
3593213
3593288
+
Asp
GTC
[Ensembl]
¡û
>C131003505
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
3593047
3593121
+
Asp
GTC
[Ensembl]
¡û
>W1710594185
FSRB01000002
Planctomycetota
Singulisphaera sp. GP187 [FSRB]
1587098
1587024
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK