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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192191 (46 seq.)
>W1710892690
LNDZ01000032
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
606
530
-
Met
CAT
[ENA]
¡û
>W1711223926
LXTQ01000030
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
88695
88771
+
Met
CAT
[ENA]
¡û
>W1711339999
MCAW01000010
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
69580
69656
+
Met
CAT
[ENA]
¡û
>W1711421799
MHZV01000108
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_19 [MHZV]
60278
60354
+
Met
CAT
[ENA]
¡û
>W1711421835
MHZW01000207
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_20 [MHZW]
2474
2398
-
Met
CAT
[ENA]
¡û
>W1711583886
MNXU01000034
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_68_42 [MNXU]
2587
2511
-
Met
CAT
[ENA]
¡û
>W131163086
AQZM01000007
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
474324
474400
+
Met
CAT
[ENA]
¡û
>W131166924
ARCV01000005
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
900572
900496
-
Met
CAT
[ENA]
¡û
>W131170308
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
1238742
1238666
-
Met
CAT
[ENA]
¡û
>W131186099
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
3822303
3822379
+
Met
CAT
[ENA]
¡û
>W131186642
ARWH01000001
Betaproteobacteria
Methyloversatilis universalis Fam500 [ARWH]
2767579
2767655
+
Met
CAT
[ENA]
¡û
>C171049730
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
2595403
2595479
+
Met
CAT
-
¡û
>WENV180257806
OBEQ010943274
[OBEQ] groundwater metagenome; groundwater
2680
2604
-
Met
CAT
[ENA]
¢þ
>WENV180284574
OBID01062818
[OBID] metagenome; sludge
740
664
-
Met
CAT
[ENA]
¢þ
>WENV180311737
OBJT01516644
[OBJT] soil metagenome; soil
88
12
-
Met
CAT
[ENA]
¢þ
>WENV180370998
OBOI01000065
[OBOI] sediment metagenome; sediment
26650
26726
+
Met
CAT
[ENA]
¢þ
>WENV181144252
OEHO01000455
[OEHO] metagenome; unknown
1494
1570
+
Met
CAT
[ENA]
¢þ
>WENV181169160
OEIV010000472
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6258
6182
-
Met
CAT
[ENA]
¢þ
>WENV181223564
OFDC01033513
[OFDC] hot springs metagenome; Water
960
1036
+
Met
CAT
[ENA]
¢þ
>WENV181227296
OFDN01005500
[OFDN] hot springs metagenome; Water
77
1
-
Met
CAT
[ENA]
¢þ
>WENV181414942
OGCL01002416
[OGCL] hot springs metagenome; Hot spring water
6024
6100
+
Met
CAT
[ENA]
¢þ
>WENV181415186
OGCL01005473
[OGCL] hot springs metagenome; Hot spring water
5182
5258
+
Met
CAT
[ENA]
¢þ
>W141216093
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
3572053
3571977
-
Met
CAT
[ENA]
¡û
>WENV183670010
ORJL010899034
[ORJL] groundwater metagenome; groundwater
1499
1423
-
Met
CAT
[ENA]
¢þ
>WENV183672439
ORJL011170109
[ORJL] groundwater metagenome; groundwater
193
117
-
Met
CAT
[ENA]
¢þ
>WENV183678836
ORJL011930079
[ORJL] groundwater metagenome; groundwater
1676
1600
-
Met
CAT
[ENA]
¢þ
>WENV183680902
ORMF010237408
[ORMF] groundwater metagenome; groundwater
128656
128732
+
Met
CAT
[ENA]
¢þ
>WENV183687203
ORMF011111961
[ORMF] groundwater metagenome; groundwater
248
172
-
Met
CAT
[ENA]
¢þ
>WENV183703745
PDVJ01040509
[PDVJ] alkali sediment metagenome; glacial lake sediment
116
40
-
Met
CAT
[ENA]
¢þ
>WENV170010197
APMI01010694
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4317
4393
+
Met
CAT
[ENA]
¢þ
>WENV170554217
CXWK01054316
[CXWK] wastewater metagenome; activated sludge
1173
1249
+
Met
CAT
[ENA]
¢þ
>WENV170705495
LNAO01001085
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2144
2068
-
Met
CAT
[ENA]
¢þ
>WENV170707468
LNAP01021928
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3273
3349
+
Met
CAT
[ENA]
¢þ
>WENV170708729
LNAQ01000311
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10188
10264
+
Met
CAT
[ENA]
¢þ
>WENV170709789
LNFM01000706
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
163
87
-
Met
CAT
[ENA]
¢þ
>WENV170961437
MLJW01000041
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
151174
151250
+
Met
CAT
[ENA]
¢þ
>WENV170961697
MLJW01000556
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
7049
6973
-
Met
CAT
[ENA]
¢þ
>C191004273
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
236201
236277
+
Met
CAT
-
¡û
>C191007502
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
234290
234366
+
Met
CAT
-
¡û
>W1910015422
BDOQ01000019
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
102395
102319
-
Met
CAT
[ENA]
¡û
>W1910744071
MHZX01000030
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
36062
35986
-
Met
CAT
[ENA]
¡û
>C151000895
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
226446
226522
+
Met
CAT
[Ensembl]
¡û
>C151071185
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
50148
50224
+
Met
CAT
[Ensembl]
¡û
>W11162837
AFHG01000058
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
197960
197884
-
Met
CAT
[ENA]
¡û
>W1610752956
LNDZ01000032
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
606
530
-
Met
CAT
[ENA]
¡û
>W1611008297
LXTQ01000030
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
88695
88771
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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