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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192236 (50 seq.)
>W1711250233
LYMV01000124
Alphaproteobacteria
Rickettsia sp. wb [LYMV]
476
400
-
Asp
GTC
[ENA]
¡û
>W1711250288
LYMW01000270
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
472
396
-
Asp
GTC
[ENA]
¡û
>W1711505811
MKVW01000001
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
546267
546343
+
Asp
GTC
[ENA]
¡û
>C171035051
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
1218689
1218613
-
Asp
GTC
-
¡û
>C018286
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
689265
689341
+
Asp
GTC
[Ensembl]
¡û
>C018585
CP000053
Alphaproteobacteria
Rickettsia felis URRWXCal2 URRWXCal2; California 2 [CP000053]
754425
754349
-
Asp
GTC
[Ensembl]
¡û
>w017294
AARC01000001
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [AARC]
843480
843407
-
Asp
GTC
[ENA]
¡û
>w005068
AAFF01000001
Alphaproteobacteria
Rickettsia canadensis str. McKiel [AAFF]
632465
632541
+
Asp
GTC
[ENA]
¡û
>WENV180282669
OBIC01001033
[OBIC] beach sand metagenome; beach sand
3442
3518
+
Asp
GTC
[ENA]
¢þ
>WENV180397497
OBPY01013598
[OBPY] marine metagenome; Mesotrophic water
133
57
-
Asp
GTC
[ENA]
¢þ
>C08008060
CP000409
Alphaproteobacteria
Rickettsia canadensis str. McKiel [CP000409]
632465
632541
+
Asp
GTC
[Ensembl]
¡û
>C08008040
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
843480
843407
-
Asp
GTC
[Ensembl]
¡û
>WENV182583174
OJHD01000860
[OJHD] seawater metagenome; Sea water
652
728
+
Asp
GTC
[ENA]
¢þ
>WENV170010853
APMI01031914
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3404
3480
+
Asp
GTC
[ENA]
¢þ
>WENV170011662
APMI01080461
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
26
102
+
Asp
GTC
[ENA]
¢þ
>WENV170155436
CEOG01030025
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
834
758
-
Asp
GTC
[ENA]
¢þ
>WENV170305794
CESI01239281
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
206
282
+
Asp
GTC
[ENA]
¢þ
>WENV170530814
CEWK01061324
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
267
191
-
Asp
GTC
[ENA]
¢þ
>WENV170652198
JRYH01000044
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
8194
8118
-
Asp
GTC
[ENA]
¢þ
>WENV170704441
LLEK01000404
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1721
1797
+
Asp
GTC
[ENA]
¢þ
>WENV170710106
LNFM01001153
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
51326
51250
-
Asp
GTC
[ENA]
¢þ
>C181019112
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
1105676
1105752
+
Asp
GTC
-
¡û
>C191158556
CP038255
Alphaproteobacteria
Terasakiella sp. SH-1 [CP038255]
956492
956568
+
Asp
GTC
-
¡û
>C191158557
CP038255
Alphaproteobacteria
Terasakiella sp. SH-1 [CP038255]
956597
956673
+
Asp
GTC
-
¡û
>C191158593
CP038255
Alphaproteobacteria
Terasakiella sp. SH-1 [CP038255]
1469200
1469124
-
Asp
GTC
-
¡û
>W141561586
JHYO01000024
Alphaproteobacteria
Terasakiella pusilla DSM 6293 [JHYO]
24451
24375
-
Asp
GTC
[ENA]
¡û
>W141561593
JHYO01000033
Alphaproteobacteria
Terasakiella pusilla DSM 6293 [JHYO]
8463
8539
+
Asp
GTC
[ENA]
¡û
>W141561594
JHYO01000033
Alphaproteobacteria
Terasakiella pusilla DSM 6293 [JHYO]
8612
8688
+
Asp
GTC
[ENA]
¡û
>W1911493249
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1511165
1511089
-
Asp
GTC
[ENA]
¡û
>W1911493250
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1511037
1510961
-
Asp
GTC
[ENA]
¡û
>W1911493251
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1510920
1510844
-
Asp
GTC
[ENA]
¡û
>W1810725547
QODK01000002
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
274571
274495
-
Asp
GTC
[ENA]
¡û
>W1810725548
QODK01000002
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
274449
274373
-
Asp
GTC
[ENA]
¡û
>ENV09001666
ACQI01001629
Hydrothermal vent metagenome LCHCB.C1
755
679
-
Asp
GTC
[ENA]
¡û
>ENV09001667
ACQI01001629
Hydrothermal vent metagenome LCHCB.C1
619
543
-
Asp
GTC
[ENA]
¡û
>W1510060672
CCXM01000001
Alphaproteobacteria
Rickettsia hoogstraalii Croatica [CCXM]
831
755
-
Asp
GTC
[ENA]
¡û
>WENV038608
AACY021947098
Marine microbial communities from Global Ocean Sampling (GOS)
150
228
+
Asp
GTC
[ENA]
>W1511365672
JSEL01000013
Alphaproteobacteria
Rickettsia felis LSU-Lb [JSEL]
121199
121275
+
Asp
GTC
[ENA]
¡û
>W1511365705
JSEM01000010
Alphaproteobacteria
Rickettsia felis str. LSU [JSEM]
344715
344791
+
Asp
GTC
[ENA]
¡û
>W1511489431
JWSW01000016
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
18305
18381
+
Asp
GTC
[ENA]
¡û
>W1511574220
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
76525
76601
+
Asp
GTC
[ENA]
¡û
>W1511574620
LAOB01000001
Alphaproteobacteria
Rickettsia hoogstraalii str. RCCE3 [LAOB]
87127
87203
+
Asp
GTC
[ENA]
¡û
>W1511574869
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
606388
606464
+
Asp
GTC
[ENA]
¡û
>W1511574923
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
520374
520298
-
Asp
GTC
[ENA]
¡û
>C121010378
CP003304
Alphaproteobacteria
Rickettsia canadensis str. CA410 [CP003304]
622657
622733
+
Asp
GTC
[Ensembl]
¡û
>C121011243
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
823966
824042
+
Asp
GTC
[Ensembl]
¡û
>W121045263
AICO01000001
Alphaproteobacteria
Rickettsia helvetica C9P9 [AICO]
841592
841668
+
Asp
GTC
[ENA]
¡û
>W121070045
AJWD01000237
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
107
183
+
Asp
GTC
[ENA]
¡û
>W121102317
AKVZ01000019
Alphaproteobacteria
Rickettsia australis str. Phillips [AKVZ]
15472
15396
-
Asp
GTC
[ENA]
¡û
>W1710535152
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
2455625
2455549
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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