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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192272 (48 seq.)
>C171074537
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
832435
832511
+
Ile
GAT
-
¡û
>C171074553
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
2600417
2600341
-
Ile
GAT
-
¡û
>C171074559
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
2030996
2030920
-
Ile
GAT
-
¡û
>C171074589
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
842363
842439
+
Ile
GAT
-
¡û
>C171074605
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
2627959
2627883
-
Ile
GAT
-
¡û
>C171074611
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
2053917
2053841
-
Ile
GAT
-
¡û
>C171074641
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
842354
842430
+
Ile
GAT
-
¡û
>C171074657
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
2583602
2583526
-
Ile
GAT
-
¡û
>C171074663
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
2009473
2009397
-
Ile
GAT
-
¡û
>C171074693
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
838884
838960
+
Ile
GAT
-
¡û
>C171074709
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
2598847
2598771
-
Ile
GAT
-
¡û
>C171074715
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
2027964
2027888
-
Ile
GAT
-
¡û
>C171074745
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
842364
842440
+
Ile
GAT
-
¡û
>C171074761
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
2627960
2627884
-
Ile
GAT
-
¡û
>C171074767
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
2053918
2053842
-
Ile
GAT
-
¡û
>C171074797
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
832495
832571
+
Ile
GAT
-
¡û
>C171074813
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
2599114
2599038
-
Ile
GAT
-
¡û
>C171074819
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
2029694
2029618
-
Ile
GAT
-
¡û
>C009819
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
832490
832566
+
Ile
GAT
[Ensembl]
¡û
>C009835
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
2599033
2598957
-
Ile
GAT
[Ensembl]
¡û
>C009841
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
2029622
2029546
-
Ile
GAT
[Ensembl]
¡û
>WENV181407227
OGCG01011097
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
309
384
+
Ile
GAT
[ENA]
¢þ
>WENV183674418
ORJL011386720
[ORJL] groundwater metagenome; groundwater
220
144
-
Ile
GAT
[ENA]
¢þ
>WENV183695546
ORMF012407484
[ORMF] groundwater metagenome; groundwater
338
414
+
Ile
GAT
[ENA]
¢þ
>WENV170011358
APMI01060111
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2406
2330
-
Ile
GAT
[ENA]
¢þ
>WENV170714814
LNFM01104108
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
980
904
-
Ile
GAT
[ENA]
¢þ
>C181077134
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
145476
145552
+
Ile
GAT
-
¡û
>C181077153
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
1218981
1219057
+
Ile
GAT
-
¡û
>C181077156
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
1396736
1396812
+
Ile
GAT
-
¡û
>C181175714
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
2795277
2795204
-
Ile
GAT
-
¡û
>W1910913959
NHRY01000182
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
3785
3709
-
Ile
GAT
[ENA]
¡û
>W1911281092
NTHL01000013
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
1135
1059
-
Ile
GAT
[ENA]
¡û
>W1911281094
NTHL01000014
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
1287
1211
-
Ile
GAT
[ENA]
¡û
>W1911281096
NTHL01000016
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
286
362
+
Ile
GAT
[ENA]
¡û
>W1911281098
NTHL01000018
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
1238
1314
+
Ile
GAT
[ENA]
¡û
>W1911281134
NTHL01000092
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
116
40
-
Ile
GAT
[ENA]
¡û
>W1911281135
NTHL01000100
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
307
383
+
Ile
GAT
[ENA]
¡û
>C151004009
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
835129
835205
+
Ile
GAT
[Ensembl]
¡û
>C151004025
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
2601704
2601628
-
Ile
GAT
[Ensembl]
¡û
>C151004031
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
2029736
2029660
-
Ile
GAT
[Ensembl]
¡û
>C151004061
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
838982
839058
+
Ile
GAT
[Ensembl]
¡û
>C151004067
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
1409142
1409218
+
Ile
GAT
[Ensembl]
¡û
>C151004084
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2605854
2605778
-
Ile
GAT
[Ensembl]
¡û
>C151004113
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
832337
832413
+
Ile
GAT
[Ensembl]
¡û
>C151004119
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
1401662
1401738
+
Ile
GAT
[Ensembl]
¡û
>C151004136
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2627963
2627887
-
Ile
GAT
[Ensembl]
¡û
>W1610041022
BANB01000583
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
1993
2069
+
Ile
GAT
[ENA]
¡û
>W1710038220
BANB01000583
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
1993
2069
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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