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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192279 (19 seq.)
>WENV016675
AACY020468134
Marine microbial communities from Global Ocean Sampling (GOS)
1403
1325
-
Arg
ACG
[ENA]
>WENV016804
AACY020470294
Marine microbial communities from Global Ocean Sampling (GOS)
4931
5009
+
Arg
ACG
[ENA]
>WENV180369676
OBOH01000059
[OBOH] marine metagenome; ENVO:00002010
7207
7283
+
Arg
ACG
[ENA]
¢þ
>WENV180635837
OCRE01013670
[OCRE] marine metagenome; Seawater
315
391
+
Arg
ACG
[ENA]
¢þ
>WENV170320205
CESQ01230452
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
356
280
-
Arg
ACG
[ENA]
¢þ
>WENV170407379
CEUH01131730
[CEUH] marine metagenome genome assembly TARA_137_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
83
159
+
Arg
ACG
[ENA]
¢þ
>WENV170411662
CEUJ01275075
[CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
420
344
-
Arg
ACG
[ENA]
¢þ
>WENV170601232
FUWD010162304
[FUWD] metagenome; unknown
448
372
-
Arg
ACG
[ENA]
¢þ
>WENV170793190
MDSV01111908
[MDSV] marine metagenome; seawater
3117
3041
-
Arg
ACG
[ENA]
¢þ
>WENV170903229
MDTD01198492
[MDTD] marine metagenome; seawater
564
640
+
Arg
ACG
[ENA]
¢þ
>WENV047226
AACY022648154
Marine microbial communities from Global Ocean Sampling (GOS)
527
449
-
Arg
ACG
[ENA]
>WENV047365
AACY022661333
Marine microbial communities from Global Ocean Sampling (GOS)
161
83
-
Arg
ACG
[ENA]
>WENV057435
AACY023294735
Marine microbial communities from Global Ocean Sampling (GOS)
204
282
+
Arg
ACG
[ENA]
>W1610626162
LIBT01000062
Alphaproteobacteria
Pelagibacteraceae bacterium BACL5 MAG-120705-bin12 [LIBT]
169
93
-
Arg
ACG
[ENA]
¡û
>W1610626184
LIBV01000004
Alphaproteobacteria
Pelagibacteraceae bacterium BACL5 MAG-120820-bin39 [LIBV]
23202
23278
+
Arg
ACG
[ENA]
¡û
>W1610626207
LIBW01000003
Alphaproteobacteria
Pelagibacteraceae bacterium BACL5 MAG-121015-bin10 [LIBW]
7964
7888
-
Arg
ACG
[ENA]
¡û
>W1710757289
LIBT01000062
Alphaproteobacteria
Pelagibacteraceae bacterium BACL5 MAG-120705-bin12 [LIBT]
169
93
-
Arg
ACG
[ENA]
¡û
>W1710757311
LIBV01000004
Alphaproteobacteria
Pelagibacteraceae bacterium BACL5 MAG-120820-bin39 [LIBV]
23202
23278
+
Arg
ACG
[ENA]
¡û
>W1710757334
LIBW01000003
Alphaproteobacteria
Pelagibacteraceae bacterium BACL5 MAG-121015-bin10 [LIBW]
7964
7888
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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