This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.192807 (9 seq.)
>WENV180095974
MTBK01100219
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV181122060
OEFL01060156
[OEFL] human metagenome; G_DNA_Supragingival plaque
94
18
-
Asp
GTC
[ENA]
¢þ
>WENV183706057
PDWI01002994
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6205
6281
+
Asp
GTC
[ENA]
¢þ
>WENV183708085
PDWI01012833
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
744
820
+
Asp
GTC
[ENA]
¢þ
>WENV183711827
PDWI01081479
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2278
2354
+
Asp
GTC
[ENA]
¢þ
>WENV170613490
FUWD012808385
[FUWD] metagenome; unknown
653
577
-
Asp
GTC
[ENA]
¢þ
>W1910784337
MPSQ01000001
Unclassified
SR1 bacterium human oral taxon HOT-345 [MPSQ]
842298
842222
-
Asp
GTC
[ENA]
¡û
>SRA1022255
SRR035083.375567
454 Sequencing (SRP001804)
102
26
-
Asp
GTC
[SRA]
>W1511598496
LBRC01000023
Unclassified
Parcubacteria group bacterium GW2011_GWA2_36_10 GW2011_GWA2_36_10 [LBRC]
10557
10481
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK