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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193253 (75 seq.)
>W1710915887
LNUP01000002
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
306971
306895
-
Met
CAT
[ENA]
¡û
>W1711174181
LWDZ01000010
Gammaproteobacteria
Pseudomonas argentinensis [LWDZ]
155850
155926
+
Met
CAT
[ENA]
¡û
>W1711178754
LWHA01000004
Gammaproteobacteria
Pseudomonas seleniipraecipitans punonensis [LWHA]
52501
52425
-
Met
CAT
[ENA]
¡û
>W1711212908
LXJR01000027
Gammaproteobacteria
Pseudomonas sp. 21C1 [LXJR]
36000
36076
+
Met
CAT
[ENA]
¡û
>W1711256269
LYSP01000038
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
30582
30506
-
Met
CAT
[ENA]
¡û
>W131055639
ANBZ01000067
Gammaproteobacteria
Pseudomonas sp. 313 [ANBZ]
218823
218899
+
Met
CAT
[ENA]
¡û
>W131144689
AQFP01000005
Gammaproteobacteria
Pseudomonas sp. HPB0071 [AQFP]
175770
175846
+
Met
CAT
[ENA]
¡û
>W1711708784
MSXU01000013
Gammaproteobacteria
Pseudomonas sp. PA1(2017) [MSXU]
175157
175233
+
Met
CAT
[ENA]
¡û
>W1711723454
MTLN01000010
Gammaproteobacteria
Pseudomonas psychrotolerans [MTLN]
202027
202103
+
Met
CAT
[ENA]
¡û
>C171083156
CP018758
Gammaproteobacteria
Pseudomonas psychrotolerans PRS08-11306 [CP018758]
3751353
3751277
-
Met
CAT
-
¡û
>C171114320
CP020892
Gammaproteobacteria
Pseudomonas sp. M30-35 [CP020892]
1194722
1194646
-
Met
CAT
-
¡û
>W141076161
ATCP01000162
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
35220
35144
-
Met
CAT
[ENA]
¡û
>WENV181414742
OGCL01001224
[OGCL] hot springs metagenome; Hot spring water
3588
3664
+
Met
CAT
[ENA]
¢þ
>WENV181415010
OGCL01003094
[OGCL] hot springs metagenome; Hot spring water
9379
9303
-
Met
CAT
[ENA]
¢þ
>W141207656
AZNY01000007
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I1 [AZNY]
10127
10051
-
Met
CAT
[ENA]
¡û
>W141207779
AZOA01000019
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I2 [AZOA]
9883
9807
-
Met
CAT
[ENA]
¡û
>W141207810
AZOB01000008
Gammaproteobacteria
Pseudomonas oleovorans MOIL14HWK12 [AZOB]
10111
10035
-
Met
CAT
[ENA]
¡û
>W141217339
AZVM01000007
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I4 [AZVM]
50628
50552
-
Met
CAT
[ENA]
¡û
>W141217431
AZVO01000012
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I3 [AZVO]
77780
77856
+
Met
CAT
[ENA]
¡û
>W141231101
BATO01000071
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
18598
18674
+
Met
CAT
[ENA]
¡û
>W141236956
BBIT01000013
Gammaproteobacteria
Pseudomonas oryzihabitans NBRC 102199 [BBIT]
10029
9953
-
Met
CAT
[ENA]
¡û
>WENV170315872
CESO01310246
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
657
581
-
Met
CAT
[ENA]
¢þ
>WENV170537266
CEWQ01044213
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
299
-
Met
CAT
[ENA]
¢þ
>C191044781
CP026512
Gammaproteobacteria
Candidatus Pseudomonas adelgestsugas [CP026512]
668665
668589
-
Met
CAT
-
¡û
>C191100971
CP033105
Gammaproteobacteria
Pseudomonas sp. LTJR-52 [CP033105]
897322
897246
-
Met
CAT
-
¡û
>W1910548061
FZOG01000001
Gammaproteobacteria
Pseudomonas segetis CIP 108523 [FZOG]
36796
36720
-
Met
CAT
[ENA]
¡û
>W1911681291
QJUH01000039
Gammaproteobacteria
Pseudomonas sp. FRB 228 P2A [QJUH]
23435
23359
-
Met
CAT
[ENA]
¡û
>W1911681344
QJUI01000025
Gammaproteobacteria
Pseudomonas daroniae P9A [QJUI]
39007
38931
-
Met
CAT
[ENA]
¡û
>W1911681402
QJUJ01000016
Gammaproteobacteria
Pseudomonas daroniae P18A [QJUJ]
22290
22366
+
Met
CAT
[ENA]
¡û
>W1911681458
QJUK01000040
Gammaproteobacteria
Pseudomonas daroniae P23A [QJUK]
854
930
+
Met
CAT
[ENA]
¡û
>W1911681572
QJUM01000032
Gammaproteobacteria
Pseudomonas dryadis P26B [QJUM]
22649
22725
+
Met
CAT
[ENA]
¡û
>W1911681627
QJUN01000028
Gammaproteobacteria
Pseudomonas sp. FRB 230 P27B [QJUN]
46563
46487
-
Met
CAT
[ENA]
¡û
>W1911681670
QJUO01000028
Gammaproteobacteria
Stutzerimonas kirkiae P4C [QJUO]
45743
45819
+
Met
CAT
[ENA]
¡û
>W1911681767
QJUQ01000018
Gammaproteobacteria
Stutzerimonas kirkiae P28C [QJUQ]
82405
82329
-
Met
CAT
[ENA]
¡û
>W1911681806
QJUR01000002
Gammaproteobacteria
Stutzerimonas kirkiae P30C [QJUR]
108474
108398
-
Met
CAT
[ENA]
¡û
>W1911802980
QYUR01000006
Gammaproteobacteria
Pseudomonas cavernicola K1S02-6 [QYUR]
985461
985537
+
Met
CAT
[ENA]
¡û
>W1810378826
PXJI01000284
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
3000
2924
-
Met
CAT
[ENA]
¡û
>W1810501427
QBIZ02000019
Gammaproteobacteria
Pseudomonas sp. RIT 411 [QBIZ]
78809
78885
+
Met
CAT
[ENA]
¡û
>W1810680750
QKRU01000016
Gammaproteobacteria
Pseudomonas sp. 57B-090624 [QKRU]
112192
112268
+
Met
CAT
[ENA]
¡û
>W1810684862
QKYW01000008
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I2 [QKYW]
55432
55356
-
Met
CAT
[ENA]
¡û
>W1810685127
QKZB01000003
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I1 [QKZB]
52527
52451
-
Met
CAT
[ENA]
¡û
>W1810787105
QRDL01000006
Gammaproteobacteria
Pseudomonas oleovorans AG1002 [QRDL]
9589
9513
-
Met
CAT
[ENA]
¡û
>C11117238
CP002727
Gammaproteobacteria
Pseudomonas fulva 12-X [CP002727]
995810
995734
-
Met
CAT
[Ensembl]
¡û
>W1511509247
JXQW01000097
Gammaproteobacteria
Pseudomonas fulva MEJ086 [JXQW]
60863
60787
-
Met
CAT
[ENA]
¡û
>W1511525029
JYFT01000032
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
4535
4459
-
Met
CAT
[ENA]
¡û
>W1511530675
JYKV01000027
Gammaproteobacteria
Pseudomonas oryzihabitans RIT370 [JYKV]
44110
44186
+
Met
CAT
[ENA]
¡û
>W121104868
ALAT01000180
Gammaproteobacteria
Pseudomonas luteola XLDN4-9 [ALAT]
33849
33925
+
Met
CAT
[ENA]
¡û
>W1610592137
LDSO01000043
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
20502
20578
+
Met
CAT
[ENA]
¡û
>W1610592240
LDSQ01000029
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
9750
9674
-
Met
CAT
[ENA]
¡û
>W1610592288
LDSR01000027
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
9880
9804
-
Met
CAT
[ENA]
¡û
>W1610592388
LDST01000014
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
40170
40246
+
Met
CAT
[ENA]
¡û
>W1610592538
LDSV01000039
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSV]
20530
20606
+
Met
CAT
[ENA]
¡û
>W1610592559
LDSW01000011
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
10053
9977
-
Met
CAT
[ENA]
¡û
>W1610592775
LDSZ01000045
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
10129
10053
-
Met
CAT
[ENA]
¡û
>W1610592795
LDTA01000019
Gammaproteobacteria
Pseudomonas psychrotolerans [LDTA]
10017
9941
-
Met
CAT
[ENA]
¡û
>W1610774126
LNUP01000002
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
306971
306895
-
Met
CAT
[ENA]
¡û
>W1710076041
BDAE01000002
Gammaproteobacteria
Pseudomonas luteola NBRC 103146 [BDAE]
12878
12802
-
Met
CAT
[ENA]
¡û
>W1710508393
FMWB01000006
Gammaproteobacteria
Pseudomonas psychrotolerans [FMWB]
10197
10121
-
Met
CAT
[ENA]
¡û
>W1710515063
FNBM01000001
Gammaproteobacteria
Pseudomonas seleniipraecipitans [FNBM]
52092
52016
-
Met
CAT
[ENA]
¡û
>W1710517389
FNDG01000034
Gammaproteobacteria
Pseudomonas flavescens [FNDG]
554
630
+
Met
CAT
[ENA]
¡û
>W1710534792
FNSC01000001
Gammaproteobacteria
Pseudomonas anguilliseptica [FNSC]
269654
269730
+
Met
CAT
[ENA]
¡û
>W1710548929
FOED01000004
Gammaproteobacteria
Pseudomonas sp. Snoq117.2 [FOED]
450063
450139
+
Met
CAT
[ENA]
¡û
>W1710549855
FOEV01000002
Gammaproteobacteria
Pseudomonas lutea [FOEV]
13216
13140
-
Met
CAT
[ENA]
¡û
>W1710550829
FOFP01000007
Gammaproteobacteria
Pseudomonas cuatrocienegasensis [FOFP]
41594
41518
-
Met
CAT
[ENA]
¡û
>W1710559369
FOMO01000007
Gammaproteobacteria
Pseudomonas straminea [FOMO]
48035
47959
-
Met
CAT
[ENA]
¡û
>W1710572771
FOWX01000037
Gammaproteobacteria
Pseudomonas borbori [FOWX]
27187
27111
-
Met
CAT
[ENA]
¡û
>W1710591361
FRBQ01000006
Gammaproteobacteria
Pseudomonas punonensis [FRBQ]
1829
1753
-
Met
CAT
[ENA]
¡û
>W1710711417
LDSO01000043
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
20502
20578
+
Met
CAT
[ENA]
¡û
>W1710711520
LDSQ01000029
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
9750
9674
-
Met
CAT
[ENA]
¡û
>W1710711568
LDSR01000027
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
9880
9804
-
Met
CAT
[ENA]
¡û
>W1710711668
LDST01000014
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
40170
40246
+
Met
CAT
[ENA]
¡û
>W1710711818
LDSV01000039
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSV]
20530
20606
+
Met
CAT
[ENA]
¡û
>W1710711839
LDSW01000011
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
10053
9977
-
Met
CAT
[ENA]
¡û
>W1710712055
LDSZ01000045
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
10129
10053
-
Met
CAT
[ENA]
¡û
>W1710712075
LDTA01000019
Gammaproteobacteria
Pseudomonas psychrotolerans [LDTA]
10017
9941
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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