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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193267 (54 seq.)
>W1710868739
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
3204934
3205008
+
Leu
CAA
[ENA]
¡û
>W1710875656
LMOO01000001
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
185375
185299
-
Leu
CAA
[ENA]
¡û
>W1710877719
LMQI01000005
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
715237
715313
+
Leu
CAA
[ENA]
¡û
>W1710914180
LNTD01000104
Actinomycetota
Cellulomonas sp. B6 [LNTD]
46972
47046
+
Leu
CAA
[ENA]
¡û
>W1711503110
MKTI01000001
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
157045
157121
+
Leu
CAA
[ENA]
¡û
>W1712056160
NFZP01000010
Actinomycetota
Cellulomonas iranensis [NFZP]
59414
59488
+
Leu
CAA
[ENA]
¡û
>W131227069
AUEW01000001
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
223840
223764
-
Leu
CAA
[ENA]
¡û
>W141153019
AXCW01000107
Actinomycetota
Actinotalea ferrariae CF5-4 [AXCW]
7681
7757
+
Leu
CAA
[ENA]
¡û
>W141279317
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
3894500
3894576
+
Leu
CAA
[ENA]
¡û
>WENV183726941
PJTO01000725
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
4627
4552
-
Leu
CAA
[ENA]
¢þ
>WENV183728468
PJTQ01000063
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
116567
116492
-
Leu
CAA
[ENA]
¢þ
>WENV183729761
PJTR01000058
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
96833
96908
+
Leu
CAA
[ENA]
¢þ
>WENV183731669
PJTT01000088
[PJTT] soil metagenome; Soil (2) enriched on wood chips
96833
96908
+
Leu
CAA
[ENA]
¢þ
>WENV183732224
PJTW01000007
[PJTW] soil metagenome; Soil enriched on wood chips
96833
96908
+
Leu
CAA
[ENA]
¢þ
>WENV183734379
PJTZ01003987
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
742
817
+
Leu
CAA
[ENA]
¢þ
>WENV183736158
PJUC01000066
[PJUC] soil metagenome; Soil enriched on filter paper
19975
19900
-
Leu
CAA
[ENA]
¢þ
>WENV183737915
PJUD01050660
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
864
940
+
Leu
CAA
[ENA]
¢þ
>WENV183739863
PJUF01000034
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
95842
95917
+
Leu
CAA
[ENA]
¢þ
>WENV183743125
PJUJ01000045
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
64067
63992
-
Leu
CAA
[ENA]
¢þ
>WENV183744672
PJUL01000059
[PJUL] feces metagenome; Chicken feces enriched on filter paper
96833
96908
+
Leu
CAA
[ENA]
¢þ
>WENV170961622
MLJW01000243
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2796
2720
-
Leu
CAA
[ENA]
¢þ
>C191104256
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
1478832
1478754
-
Leu
CAA
-
¡û
>C191183906
CP040899
Actinomycetota
Georgenia wutianyii Z294 [CP040899]
1803355
1803431
+
Leu
CAA
-
¡û
>C191210076
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
2020252
2020177
-
Leu
CAA
-
¡û
>W141564172
JIAN01000011
Actinomycetota
Cellulomonas sp. URHE0023 [JIAN]
94194
94270
+
Leu
CAA
[ENA]
¡û
>W09108566
ABTJ01000098
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
2094
2018
-
Leu
CAA
[ENA]
¡û
>W1910129176
BHYL01000075
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
14198
14274
+
Leu
CAA
[ENA]
¡û
>W1910155474
BIMR01000059
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
43937
44012
+
Leu
CAA
[ENA]
¡û
>W1910181060
BJLP01000059
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
7622
7547
-
Leu
CAA
[ENA]
¡û
>W1910181086
BJLQ01000012
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
33159
33234
+
Leu
CAA
[ENA]
¡û
>W1910181145
BJLR01000028
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
97133
97208
+
Leu
CAA
[ENA]
¡û
>W1911502858
OEQC01000001
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
844072
844147
+
Leu
CAA
[ENA]
¡û
>W1810090080
PGFE01000002
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
679554
679629
+
Leu
CAA
[ENA]
¡û
>W1810568818
QEES01000005
Actinomycetota
Cellulomonas sp. WB94 [QEES]
80595
80670
+
Leu
CAA
[ENA]
¡û
>W1810918538
QWKP01000197
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
32056
32130
+
Leu
CAA
[ENA]
¡û
>W1510015596
BBRD01000001
Actinomycetota
Demequina aestuarii NBRC 106260 [BBRD]
1437431
1437507
+
Leu
CAA
[ENA]
¡û
>C10103434
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
2201849
2201925
+
Leu
CAA
[Ensembl]
¡û
>C11105047
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
2020232
2020156
-
Leu
CAA
[Ensembl]
¡û
>W1511595487
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
1117787
1117861
+
Leu
CAA
[ENA]
¡û
>W1511683451
LFKW01000031
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
102973
103049
+
Leu
CAA
[ENA]
¡û
>W1610029611
AXCZ01000002
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
3248
3172
-
Leu
CAA
[ENA]
¡û
>W1610029798
AXNT01000001
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
19207
19131
-
Leu
CAA
[ENA]
¡û
>W1610051556
BBGZ01000293
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
724
800
+
Leu
CAA
[ENA]
¡û
>W1610068098
BCRB01000031
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
30301
30227
-
Leu
CAA
[ENA]
¡û
>W1610207224
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
510373
510299
-
Leu
CAA
[ENA]
¡û
>W1610731085
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
3204934
3205008
+
Leu
CAA
[ENA]
¡û
>W1610738002
LMOO01000001
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
185375
185299
-
Leu
CAA
[ENA]
¡û
>W1610740065
LMQI01000005
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
715237
715313
+
Leu
CAA
[ENA]
¡û
>W1610772539
LNTD01000104
Actinomycetota
Cellulomonas sp. B6 [LNTD]
46972
47046
+
Leu
CAA
[ENA]
¡û
>W1710026981
AXCZ01000002
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
3248
3172
-
Leu
CAA
[ENA]
¡û
>W1710027126
AXNT01000001
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
19207
19131
-
Leu
CAA
[ENA]
¡û
>W1710047934
BBGZ01000293
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
724
800
+
Leu
CAA
[ENA]
¡û
>W1710065471
BCRB01000031
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
30301
30227
-
Leu
CAA
[ENA]
¡û
>W1710207918
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
510373
510299
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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