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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193275 (14 seq.)
>W1711137189
LVBB01000084
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
39308
39383
+
Asp
GTC
[ENA]
¡û
>W1711420973
MHXU01000158
Planctomycetota
Planctomycetes bacterium GWC2_45_44 [MHXU]
11413
11488
+
Asp
GTC
[ENA]
¡û
>W1711421124
MHYA01000142
Planctomycetota
Planctomycetes bacterium GWF2_42_9 [MHYA]
44611
44685
+
Asp
GTC
[ENA]
¡û
>W1711421210
MHYD01000017
Planctomycetota
Planctomycetes bacterium RBG_13_46_10 [MHYD]
14926
14851
-
Asp
GTC
[ENA]
¡û
>W1711421276
MHYG01000127
Planctomycetota
Planctomycetes bacterium RBG_13_62_9 [MHYG]
13351
13426
+
Asp
GTC
[ENA]
¡û
>WENV180298626
OBJA01482041
[OBJA] soil metagenome; sediment, water from around vicinity
142
68
-
Asp
GTC
[ENA]
¡û
>WENV183678520
ORJL011887221
[ORJL] groundwater metagenome; groundwater
209
135
-
Asp
GTC
[ENA]
¡û
>WENV170007960
AMWB02167732
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
605
530
-
Asp
GTC
[ENA]
¡û
>WENV170611881
FUWD012428890
[FUWD] metagenome; unknown
97
22
-
Asp
GTC
[ENA]
¡û
>WENV170671892
LAHU01210428
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
280
355
+
Asp
GTC
[ENA]
¡û
>WENV170718542
LSQX01080706
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1586
1662
+
Asp
GTC
[ENA]
¡û
>W1910912917
NHPQ01000035
Planctomycetota
Phycisphaerae bacterium SM-PulAB-D3 [NHPQ]
35110
35184
+
Asp
GTC
[ENA]
¡û
>W1910912918
NHPQ01000035
Planctomycetota
Phycisphaerae bacterium SM-PulAB-D3 [NHPQ]
35209
35284
+
Asp
GTC
[ENA]
¡û
>W1610948309
LVBB01000084
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
39308
39383
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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