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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193769 (19 seq.)
>WENV180285153
OBID01251265
[OBID] metagenome; sludge
25
99
+
Ile
GAT
[ENA]
¢þ
>WENV181223483
OFDC01021006
[OFDC] hot springs metagenome; Water
778
702
-
Ile
GAT
[ENA]
¢þ
>WENV181223559
OFDC01032700
[OFDC] hot springs metagenome; Water
196
272
+
Ile
GAT
[ENA]
¢þ
>WENV181227486
OFDN01012775
[OFDN] hot springs metagenome; Water
2218
2142
-
Ile
GAT
[ENA]
¢þ
>WENV181415658
OGCL01017870
[OGCL] hot springs metagenome; Hot spring water
1090
1014
-
Ile
GAT
[ENA]
¢þ
>C181179067
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
4442465
4442539
+
Ile
GAT
-
¡û
>C181179078
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
3075064
3074990
-
Ile
GAT
-
¡û
>W1910584229
JXSZ01000019
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
3485
3411
-
Ile
GAT
[ENA]
¡û
>W1810195663
PKRS01000024
Bacteroidota
Emticicia sp. TH156 [PKRS]
1774
1848
+
Ile
GAT
[ENA]
¡û
>C151063979
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
969261
969335
+
Ile
GAT
[Ensembl]
¡û
>C151064004
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3067005
3066931
-
Ile
GAT
[Ensembl]
¡û
>C11112284
CP002305
Bacteroidota
Leadbetterella byssophila DSM 17132 [CP002305]
3154457
3154533
+
Ile
GAT
[Ensembl]
¡û
>C11112298
CP002305
Bacteroidota
Leadbetterella byssophila DSM 17132 [CP002305]
2377708
2377632
-
Ile
GAT
[Ensembl]
¡û
>C121003567
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
2131060
2131136
+
Ile
GAT
[Ensembl]
¡û
>C121003589
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
1412195
1412119
-
Ile
GAT
[Ensembl]
¡û
>C161061540
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
1391822
1391896
+
Ile
GAT
[Ensembl]
¡û
>W1610617476
LGTQ01000019
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
3485
3411
-
Ile
GAT
[ENA]
¡û
>WENV079926
AATN01009193
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
127
51
-
Ile
GAT
[ENA]
>W1710743063
LGTQ01000019
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
3485
3411
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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