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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193916 (43 seq.)
>W1711710643
MSZQ01000003
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
108823
108899
+
Gln
TTG
[ENA]
¡û
>W1711711898
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
613186
613110
-
Gln
TTG
[ENA]
¡û
>W1712110537
NJIH01000008
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
315552
315628
+
Gln
TTG
[ENA]
¡û
>C171115495
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
676507
676583
+
Gln
TTG
-
¡û
>W131051779
AMXV01000036
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
4837
4761
-
Gln
TTG
[ENA]
¡û
>W131052680
AMZF01000019
Betaproteobacteria
Pusillimonas noertemannii BS8 [AMZF]
102805
102881
+
Gln
TTG
[ENA]
¡û
>W131223037
AUBT01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
190879
190955
+
Gln
TTG
[ENA]
¡û
>WENV181188097
OEOE01022990
[OEOE] activated sludge metagenome; Activated Sludge
142
66
-
Gln
TTG
[ENA]
¢þ
>WENV181392532
OFRW01075445
[OFRW] seawater metagenome; seawater
195
271
+
Gln
TTG
[ENA]
¢þ
>W141237710
BBJQ01000003
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
175593
175669
+
Gln
TTG
[ENA]
¡û
>WENV182586674
OJHK01002940
[OJHK] seawater metagenome; Sea water
2789
2713
-
Gln
TTG
[ENA]
¢þ
>WENV183627262
OOGK01079605
[OOGK] marine metagenome; seawater
321
245
-
Gln
TTG
[ENA]
¢þ
>WENV183739357
PJUE01010447
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1136
1060
-
Gln
TTG
[ENA]
¢þ
>WENV183739409
PJUE01014591
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
561
485
-
Gln
TTG
[ENA]
¢þ
>WENV183740982
PJUF01023829
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
241
317
+
Gln
TTG
[ENA]
¢þ
>WENV183741266
PJUF01071079
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
346
422
+
Gln
TTG
[ENA]
¢þ
>WENV170568412
FLMP01037742
[FLMP] seawater metagenome; seawater
835
911
+
Gln
TTG
[ENA]
¢þ
>WENV170639480
JFJP01003402
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3238
3314
+
Gln
TTG
[ENA]
¢þ
>WENV170652901
JRYH01088295
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
873
949
+
Gln
TTG
[ENA]
¢þ
>WENV170655467
JTFN01035101
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1304
1380
+
Gln
TTG
[ENA]
¢þ
>WENV170655869
JTFN01088981
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1484
1408
-
Gln
TTG
[ENA]
¢þ
>WENV170656538
JTFO01022620
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1419
1343
-
Gln
TTG
[ENA]
¢þ
>WENV170656567
JTFO01025676
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
3365
3441
+
Gln
TTG
[ENA]
¢þ
>WENV170657299
JTFO01120884
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
305
229
-
Gln
TTG
[ENA]
¢þ
>WENV170658292
JTFP01082927
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
237
161
-
Gln
TTG
[ENA]
¢þ
>WENV170690747
LFRM01359177
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1840
1764
-
Gln
TTG
[ENA]
¢þ
>WENV170705767
LNAP01000241
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
24553
24477
-
Gln
TTG
[ENA]
¢þ
>WENV170706672
LNAP01005379
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7316
7240
-
Gln
TTG
[ENA]
¢þ
>WENV170708289
LNAP01066107
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1137
1061
-
Gln
TTG
[ENA]
¢þ
>WENV170952513
MEHZ011601428
[MEHZ] marine metagenome; marine surface water
24266
24342
+
Gln
TTG
[ENA]
¢þ
>C181053213
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
616950
617026
+
Gln
TTG
-
¡û
>C181088572
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
381038
381114
+
Gln
TTG
-
¡û
>C191085250
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
844895
844971
+
Gln
TTG
-
¡û
>W1910927812
NIQA01000002
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
63038
62962
-
Gln
TTG
[ENA]
¡û
>W1911178546
NQMK01000001
Betaproteobacteria
Pusillimonas sp. NJUB218 [NQMK]
544047
544123
+
Gln
TTG
[ENA]
¡û
>W1810062108
PDNV01000011
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
30636
30560
-
Gln
TTG
[ENA]
¡û
>W1810063556
PDUW01000001
Betaproteobacteria
Pusillimonas caeni KCTC 42353 [PDUW]
90317
90241
-
Gln
TTG
[ENA]
¡û
>W1810573187
QEKO01000002
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [QEKO]
83151
83075
-
Gln
TTG
[ENA]
¡û
>W1810583898
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
610969
610893
-
Gln
TTG
[ENA]
¡û
>W1511321030
JQCV01000004
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
617374
617298
-
Gln
TTG
[ENA]
¡û
>W1511537469
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
365147
365223
+
Gln
TTG
[ENA]
¡û
>C161051374
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1703355
1703279
-
Gln
TTG
[Ensembl]
¡û
>W1610921506
LSUO01000003
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
267527
267451
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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