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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194009 (9 seq.)
>W131185679
ARTX01000018
Verrucomicrobiota
Verrucomicrobia bacterium SCGC AAA300-N18 [ARTX]
14440
14363
-
Pro
CGG
[ENA]
¡û
>WENV180374287
OBOJ01156557
[OBOJ] marine metagenome; seawater
160
236
+
Pro
CGG
[ENA]
¢þ
>WENV170195756
CEPJ01261064
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
222
299
+
Pro
CGG
[ENA]
¢þ
>WENV170257303
CEQX01243076
[CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
441
517
+
Pro
CGG
[ENA]
¢þ
>WENV170531290
CEWK01119019
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1050
1126
+
Pro
CGG
[ENA]
¢þ
>WENV170834031
MDSZ01090696
[MDSZ] marine metagenome; seawater
3633
3709
+
Pro
CGG
[ENA]
¢þ
>WENV170835751
MDSZ01119694
[MDSZ] marine metagenome; seawater
502
579
+
Pro
CGG
[ENA]
¢þ
>WENV170839231
MDSZ01182147
[MDSZ] marine metagenome; seawater
2305
2381
+
Pro
CGG
[ENA]
¢þ
>WENV170878343
MDTC01074322
[MDTC] marine metagenome; seawater
2711
2787
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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