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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194529 (18 seq.)
>C171101463
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
1289769
1289845
+
Pro
TGG
-
¡û
>W131218798
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
948840
948764
-
Pro
TGG
[ENA]
¡û
>W131166481
ARCM01000004
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
859565
859489
-
Pro
TGG
[ENA]
¡û
>WENV180344987
OBLL01446609
[OBLL] soil metagenome; soil
198
122
-
Pro
TGG
[ENA]
¢þ
>WENV181165208
OEIR01657876
[OEIR] soil metagenome; soil
84
160
+
Pro
TGG
[ENA]
¢þ
>C08001618
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
1752260
1752187
-
Pro
TGG
[Ensembl]
¡û
>WENV170706277
LNAP01001821
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3086
3010
-
Pro
TGG
[ENA]
¢þ
>WENV170707644
LNAP01028292
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3015
2939
-
Pro
TGG
[ENA]
¢þ
>C181001050
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
3024438
3024514
+
Pro
TGG
-
¡û
>C191028851
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
310997
311073
+
Pro
TGG
-
¡û
>C191220359
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
973926
973850
-
Pro
TGG
-
¡û
>W141733765
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
291321
291245
-
Pro
TGG
[ENA]
¡û
>C09107928
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
609190
609114
-
Pro
TGG
[Ensembl]
¡û
>W10110065
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
368658
368734
+
Pro
TGG
[ENA]
¡û
>C10112217
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1672045
1671969
-
Pro
TGG
[Ensembl]
¡û
>W11112502
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
368658
368734
+
Pro
TGG
[ENA]
¡û
>W1710505289
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
1083231
1083307
+
Pro
TGG
[ENA]
¡û
>W1710567169
FOSN01000005
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
140692
140616
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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