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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194599 (16 seq.)
>W131213793
ATTH01000001
Rhodothermota
Salisaeta longa DSM 21114 [ATTH]
1998771
1998845
+
Val
CAC
[ENA]
¡û
>C024101
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
674818
674894
+
Val
CAC
[Ensembl]
¡û
>WENV180318215
OBKM01000100
[OBKM] metagenome; water
33923
33997
+
Val
CAC
[ENA]
¢þ
>C181192090
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
705871
705946
+
Val
CAC
-
¡û
>C191072354
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
668637
668712
+
Val
CAC
-
¡û
>C191072398
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
713338
713413
+
Val
CAC
-
¡û
>C191072444
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
773416
773491
+
Val
CAC
-
¡û
>C191072488
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
728376
728451
+
Val
CAC
-
¡û
>C191072533
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
727752
727827
+
Val
CAC
-
¡û
>W1910785966
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
3392232
3392158
-
Val
CAC
[ENA]
¡û
>W1910870032
NCQX01000003
Rhodothermota
Salinibacter ruber SP273 [NCQX]
87462
87387
-
Val
CAC
[ENA]
¡û
>W1910870084
NCQY01000009
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
231447
231373
-
Val
CAC
[ENA]
¡û
>W1910870131
NCQZ01000020
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
250058
250132
+
Val
CAC
[ENA]
¡û
>W1910870186
NCRA01000011
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
4337
4411
+
Val
CAC
[ENA]
¡û
>W1810053890
PDEQ01000011
Rhodothermota
Longibacter salinarum KCTC 52045 [PDEQ]
54374
54297
-
Val
CAC
[ENA]
¡û
>C131018220
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
715566
715642
+
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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