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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194754 (6 seq.)
>WENV180265181
OBEQ011639928
[OBEQ] groundwater metagenome; groundwater
359
435
+
Ile
GAT
[ENA]
¢þ
>WENV180269371
OBEQ012054390
[OBEQ] groundwater metagenome; groundwater
298
374
+
Ile
GAT
[ENA]
¢þ
>WENV183671987
ORJL011124119
[ORJL] groundwater metagenome; groundwater
625
701
+
Ile
GAT
[ENA]
¢þ
>WENV183693235
ORMF012047552
[ORMF] groundwater metagenome; groundwater
465
541
+
Ile
GAT
[ENA]
¢þ
>W1910700587
METH01000115
Unclassified
candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22 [METH]
11173
11249
+
Ile
GAT
[ENA]
¡û
>W1910700624
METI01000073
Unclassified
candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 [METI]
30151
30227
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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