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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194854 (18 seq.)
>W1711404433
MFYK01000018
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
71953
71877
-
Met
CAT
[ENA]
¡û
>W1711404541
MFYN01000027
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
3433
3357
-
Met
CAT
[ENA]
¡û
>W1711582987
MNWP01000008
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
12982
12906
-
Met
CAT
[ENA]
¡û
>WENV180037041
FVAA010548051
[FVAA] soil metagenome; Soil
75
-1
-
fMet
CAT
[ENA]
¢þ
>WENV183806871
PVBE011152844
[PVBE] marine metagenome; water
2379
2303
-
fMet
CAT
[ENA]
¢þ
>WENV170661466
JXWV01033888
[JXWV] soil metagenome; rice field; organic FYM Plot
212
285
+
Met
CAT
[ENA]
¢þ
>W1910716969
MFXP01000009
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
70471
70547
+
Met
CAT
[ENA]
¡û
>W1910717187
MFXV01000003
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_52_16 [MFXV]
17649
17725
+
Met
CAT
[ENA]
¡û
>W1910717238
MFXW01000050
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_53_20 [MFXW]
4871
4947
+
Met
CAT
[ENA]
¡û
>W1910717436
MFYB01000069
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_53_10 [MFYB]
4504
4580
+
Met
CAT
[ENA]
¡û
>W1910717572
MFYF01000054
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_53_10 [MFYF]
5207
5283
+
Met
CAT
[ENA]
¡û
>SRA1017493
SRR035082.149114
454 Sequencing (SRP001803)
273
349
+
Met
CAT
[SRA]
>C161050460
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
588486
588410
-
Met
CAT
-
¡û
>C161050504
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
588641
588565
-
Met
CAT
-
¡û
>C161050548
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
588572
588496
-
Met
CAT
-
¡û
>C161050592
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
588365
588289
-
Met
CAT
-
¡û
>C161050636
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
588640
588564
-
Met
CAT
-
¡û
>WENV069673
AACY023778791
Marine microbial communities from Global Ocean Sampling (GOS)
271
347
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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