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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195107 (73 seq.)
>W1710793982
LJPU01000169
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. berberidis [LJPU]
3614
3538
-
Arg
CCG
[ENA]
¡û
>W1710795310
LJQY01000134
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. philadelphi [LJQY]
87928
88004
+
Arg
CCG
[ENA]
¡û
>W1710795766
LJRI01000771
Gammaproteobacteria
Pseudomonas syringae pv. spinaceae [LJRI]
11327
11403
+
Arg
CCG
[ENA]
¡û
>W1710853099
LLWI01000068
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
18024
17948
-
Arg
CCG
[ENA]
¡û
>W1710853153
LLWJ01000058
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
18024
17948
-
Arg
CCG
[ENA]
¡û
>W1710860419
LMCV01000048
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
147819
147895
+
Arg
CCG
[ENA]
¡û
>W1711625989
MPJC01000013
Gammaproteobacteria
Pseudomonas versuta A4R1.5 [MPJC]
14395
14319
-
Arg
CCG
[ENA]
¡û
>W1711748688
MULM01000181
Gammaproteobacteria
Pseudomonas sp. VI4.1 [MULM]
126654
126730
+
Arg
CCG
[ENA]
¡û
>C171077382
CP018319
Gammaproteobacteria
Pseudomonas frederiksbergensis AS1 [CP018319]
2194196
2194272
+
Arg
CCG
-
¡û
>C171101434
CP019947
Gammaproteobacteria
Pseudomonas sp. CC6-YY-74 [CP019947]
4336666
4336590
-
Arg
CCG
-
¡û
>W131091349
AOGS01000003
Gammaproteobacteria
Pseudomonas sp. Lz4W [AOGS]
17435
17359
-
Arg
CCG
[ENA]
¡û
>W141079482
ATLO01000050
Gammaproteobacteria
Pseudomonas sp. CFII64 [ATLO]
31765
31689
-
Arg
CCG
[ENA]
¡û
>W141079605
ATLR01000015
Gammaproteobacteria
Pseudomonas psychrophila CF149 [ATLR]
13303
13227
-
Arg
CCG
[ENA]
¡û
>W141095655
AVEM02000217
Gammaproteobacteria
Pseudomonas syringae CC1466 [AVEM]
81525
81449
-
Arg
CCG
[ENA]
¡û
>W141143649
AWSQ01000001
Gammaproteobacteria
Pseudomonas taeanensis MS-3 [AWSQ]
487142
487218
+
Arg
CCG
[ENA]
¡û
>W141212327
AZQQ01000082
Gammaproteobacteria
Pseudomonas mandelii PD30 [AZQQ]
138288
138364
+
Arg
CCG
[ENA]
¡û
>WENV170706135
LNAP01001286
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
34593
34517
-
Arg
CCG
[ENA]
¢þ
>WENV170706454
LNAP01003188
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21
97
+
Arg
CCG
[ENA]
¢þ
>WENV170707029
LNAP01011153
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21
97
+
Arg
CCG
[ENA]
¢þ
>C181025603
CP017432
Gammaproteobacteria
Pseudomonas sp. Lz4W [CP017432]
4882216
4882292
+
Arg
CCG
-
¡û
>W141695377
JMCL01000111
Gammaproteobacteria
Pseudomonas sp. Ant30-3 [JMCL]
26447
26371
-
Arg
CCG
[ENA]
¡û
>W141806815
JPNN01000025
Gammaproteobacteria
Pseudomonas syringae pv. syringae [JPNN]
6803
6879
+
Arg
CCG
[ENA]
¡û
>W141808664
JPQT01000121
Gammaproteobacteria
Pseudomonas syringae [JPQT]
20673
20749
+
Arg
CCG
[ENA]
¡û
>W1910504265
FYDJ01000002
Gammaproteobacteria
Pseudomonas sp. Irchel s3h14 [FYDJ]
586700
586776
+
Arg
CCG
[ENA]
¡û
>W1910743859
MHZN01000172
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 [MHZN]
1906
1830
-
Arg
CCG
[ENA]
¡û
>W1910753132
MKGS01000102
Gammaproteobacteria
Pseudomonas sp. 43NM1 [MKGS]
31522
31598
+
Arg
CCG
[ENA]
¡û
>W1910767823
MOBO01000040
Gammaproteobacteria
Pseudomonas brassicacearum 38D4 [MOBO]
57420
57344
-
Arg
CCG
[ENA]
¡û
>W1910767874
MOBP01000017
Gammaproteobacteria
Pseudomonas frederiksbergensis 39A2 [MOBP]
4765
4841
+
Arg
CCG
[ENA]
¡û
>W1910767942
MOBQ01000057
Gammaproteobacteria
Pseudomonas frederiksbergensis 37A10 [MOBQ]
90824
90900
+
Arg
CCG
[ENA]
¡û
>W1910767993
MOBR01000041
Gammaproteobacteria
Pseudomonas frederiksbergensis 38F7 [MOBR]
43760
43836
+
Arg
CCG
[ENA]
¡û
>W1911578595
PEGA01000026
Gammaproteobacteria
Pseudomonas prosekii A2-NA12 [PEGA]
82675
82599
-
Arg
CCG
[ENA]
¡û
>W1911578654
PEGB01000016
Gammaproteobacteria
Pseudomonas prosekii A2-NA13 [PEGB]
18018
18094
+
Arg
CCG
[ENA]
¡û
>W1810204555
PODI01000004
Gammaproteobacteria
Pseudomonas sp. FW305-33 FW507-29LB [PODI]
186350
186426
+
Arg
CCG
[ENA]
¡û
>W1810204613
PODJ01000003
Gammaproteobacteria
Pseudomonas sp. FW305-47B [PODJ]
204450
204526
+
Arg
CCG
[ENA]
¡û
>W1810204708
PODK01000043
Gammaproteobacteria
Pseudomonas sp. FW305-60 GW456-A1B [PODK]
19542
19618
+
Arg
CCG
[ENA]
¡û
>W1810204724
PODL01000004
Gammaproteobacteria
Pseudomonas sp. FW305-20 [PODL]
34695
34619
-
Arg
CCG
[ENA]
¡û
>W1810204815
PODM01000038
Gammaproteobacteria
Pseudomonas sp. FW305-122 [PODM]
19558
19634
+
Arg
CCG
[ENA]
¡û
>W1810584392
QFAV01000012
Gammaproteobacteria
Pseudomonas prosekii P2406 [QFAV]
53759
53835
+
Arg
CCG
[ENA]
¡û
>W1810584445
QFAW01000012
Gammaproteobacteria
Pseudomonas prosekii P2673 [QFAW]
72710
72634
-
Arg
CCG
[ENA]
¡û
>W1810685407
QKZG01000003
Gammaproteobacteria
Pseudomonas sp. 478 [QKZG]
588006
588082
+
Arg
CCG
[ENA]
¡û
>W1810784652
QRAV01000001
Gammaproteobacteria
Pseudomonas jessenii E2333 [QRAV]
582356
582432
+
Arg
CCG
[ENA]
¡û
>C151097124
CP012676
Gammaproteobacteria
Pseudomonas versuta L10.10 [CP012676]
4400741
4400817
+
Arg
CCG
-
¡û
>W1510073703
CDMF01000001
Gammaproteobacteria
Pseudomonas fluorescens [CDMF]
266457
266381
-
Arg
CCG
[ENA]
¡û
>W1511356665
JRUO01000028
Gammaproteobacteria
Pseudomonas syringae B576 [JRUO]
238178
238254
+
Arg
CCG
[ENA]
¡û
>W1511530803
JYKX01000003
Gammaproteobacteria
Pseudomonas deceptionensis DSM 26521 [JYKX]
538029
538105
+
Arg
CCG
[ENA]
¡û
>W1511530926
JYKZ01000009
Gammaproteobacteria
Pseudomonas psychrophila DSM 17535 [JYKZ]
131227
131303
+
Arg
CCG
[ENA]
¡û
>W1511531276
JYLF01000004
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 29166 [JYLF]
555255
555331
+
Arg
CCG
[ENA]
¡û
>W1511531320
JYLG01000003
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 28140 [JYLG]
545143
545219
+
Arg
CCG
[ENA]
¡û
>W1511547999
JZRI01000064
Gammaproteobacteria
Pseudomonas sp. ES3-33 [JZRI]
21861
21937
+
Arg
CCG
[ENA]
¡û
>W1511563476
LACD01000018
Gammaproteobacteria
Pseudomonas fluorescens C3 [LACD]
82442
82366
-
Arg
CCG
[ENA]
¡û
>W1511563692
LACH01000001
Gammaproteobacteria
Pseudomonas fluorescens H24 [LACH]
218300
218376
+
Arg
CCG
[ENA]
¡û
>W1511591684
LBHT01000089
Gammaproteobacteria
Pseudomonas psychrophila RGCB 166 [LBHT]
13442
13366
-
Arg
CCG
[ENA]
¡û
>W1511625677
LCZE01000005
Gammaproteobacteria
Pseudomonas fluorescens AU11114 [LCZE]
50001
49925
-
Arg
CCG
[ENA]
¡û
>C161061439
CP013861
Gammaproteobacteria
Pseudomonas fragi P121 [CP013861]
4964237
4964313
+
Arg
CCG
[Ensembl]
¡û
>W121044777
AHZY01000050
Gammaproteobacteria
Pseudomonas fragi A22 [AHZY]
59509
59585
+
Arg
CCG
[ENA]
¡û
>W121085869
AKJN01000049
Gammaproteobacteria
Pseudomonas sp. GM41(2012) [AKJN]
71171
71095
-
Arg
CCG
[ENA]
¡û
>W1610615911
LGLG01000238
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLG]
907
831
-
Arg
CCG
[ENA]
¡û
>W1610616986
LGSI01000065
Gammaproteobacteria
Pseudomonas syringae [LGSI]
26158
26082
-
Arg
CCG
[ENA]
¡û
>W1610620763
LHPC01000027
Gammaproteobacteria
Pseudomonas sp. RIT-PI-q [LHPC]
77895
77971
+
Arg
CCG
[ENA]
¡û
>W1610634106
LIRD01000003
Gammaproteobacteria
Pseudomonas nunensis In5 [LIRD]
607878
607954
+
Arg
CCG
[ENA]
¡û
>W1610657939
LJPU01000169
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. berberidis [LJPU]
3614
3538
-
Arg
CCG
[ENA]
¡û
>W1610659267
LJQY01000134
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. philadelphi [LJQY]
87928
88004
+
Arg
CCG
[ENA]
¡û
>W1610659723
LJRI01000771
Gammaproteobacteria
Pseudomonas syringae pv. spinaceae [LJRI]
11327
11403
+
Arg
CCG
[ENA]
¡û
>W1610716223
LLWI01000068
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
18024
17948
-
Arg
CCG
[ENA]
¡û
>W1610716277
LLWJ01000058
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
18024
17948
-
Arg
CCG
[ENA]
¡û
>W1610722765
LMCV01000048
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
147819
147895
+
Arg
CCG
[ENA]
¡û
>W1710536490
FNTF01000002
Gammaproteobacteria
Pseudomonas frederiksbergensis [FNTF]
1211129
1211053
-
Arg
CCG
[ENA]
¡û
>W1710537919
FNUD01000002
Gammaproteobacteria
Pseudomonas deceptionensis [FNUD]
809017
809093
+
Arg
CCG
[ENA]
¡û
>W1710564364
FOQL01000001
Gammaproteobacteria
Pseudomonas guineae [FOQL]
1568413
1568337
-
Arg
CCG
[ENA]
¡û
>W1710737157
LGLG01000238
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLG]
907
831
-
Arg
CCG
[ENA]
¡û
>W1710742600
LGSI01000065
Gammaproteobacteria
Pseudomonas syringae [LGSI]
26158
26082
-
Arg
CCG
[ENA]
¡û
>W1710748457
LHPC01000027
Gammaproteobacteria
Pseudomonas sp. RIT-PI-q [LHPC]
77895
77971
+
Arg
CCG
[ENA]
¡û
>W1710768483
LIRD01000003
Gammaproteobacteria
Pseudomonas nunensis In5 [LIRD]
607878
607954
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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