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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195199 (69 seq.)
>W1710785394
LJHV01000002
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
372524
372600
+
Asp
GTC
[ENA]
¡û
>W1711054711
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
368562
368638
+
Asp
GTC
[ENA]
¡û
>W1711054712
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
369369
369445
+
Asp
GTC
[ENA]
¡û
>W1711054767
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
93226
93150
-
Asp
GTC
[ENA]
¡û
>W1711054768
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
92967
92891
-
Asp
GTC
[ENA]
¡û
>W1711075220
LSKF01000102
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
1625
1701
+
Asp
GTC
[ENA]
¡û
>W1711504916
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
717072
717148
+
Asp
GTC
[ENA]
¡û
>W1711766431
MUYJ01000007
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
182336
182260
-
Asp
GTC
[ENA]
¡û
>W1711793263
MWLM01000022
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
38208
38284
+
Asp
GTC
[ENA]
¡û
>W1712049901
NFUS01000004
Alphaproteobacteria
Sphingomonas sp. IBVSS1 [NFUS]
184562
184638
+
Asp
GTC
[ENA]
¡û
>W131058838
ANFY01000009
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
236048
235972
-
Asp
GTC
[ENA]
¡û
>W131180140
ARMX01000029
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
9839
9915
+
Asp
GTC
[ENA]
¡û
>W131180141
ARMX01000029
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
10083
10159
+
Asp
GTC
[ENA]
¡û
>W131180142
ARMX01000029
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
10358
10434
+
Asp
GTC
[ENA]
¡û
>W131216098
ATVO01000003
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
526311
526235
-
Asp
GTC
[ENA]
¡û
>WENV180021017
FTDJ01001282
[FTDJ] metagenome; soil
353
429
+
Asp
GTC
[ENA]
¢þ
>WENV180025857
FTIQ01347563
[FTIQ] metagenome; soil
1002
1078
+
Asp
GTC
[ENA]
¢þ
>WENV180027521
FTIZ01002577
[FTIZ] metagenome; soil
2690
2766
+
Asp
GTC
[ENA]
¢þ
>WENV180357667
OBNN01057960
[OBNN] marine metagenome; Coastal water
168
92
-
Asp
GTC
[ENA]
¢þ
>WENV181169564
OEIV010004214
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
782
706
-
Asp
GTC
[ENA]
¢þ
>WENV181222964
OFDC01000854
[OFDC] hot springs metagenome; Water
17512
17436
-
Asp
GTC
[ENA]
¢þ
>WENV181227768
OFDN01041384
[OFDN] hot springs metagenome; Water
1050
1126
+
Asp
GTC
[ENA]
¢þ
>W141136780
AWGD01000021
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
68621
68545
-
Asp
GTC
[ENA]
¡û
>W141136812
AWGE01000007
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
52313
52389
+
Asp
GTC
[ENA]
¡û
>WENV183697253
OUNJ010156400
[OUNJ] metagenome; soil
712
788
+
Asp
GTC
[ENA]
¢þ
>WENV183729083
PJTQ01004053
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
104
180
+
Asp
GTC
[ENA]
¢þ
>WENV183740566
PJUF01003572
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4678
4602
-
Asp
GTC
[ENA]
¢þ
>WENV170004129
AGTN01571497
[AGTN] bioreactor metagenome; poplar biomass
66
142
+
Asp
GTC
[ENA]
¢þ
>WENV170555873
CXWL01002782
[CXWL] groundwater metagenome; biofilm material
18566
18490
-
Asp
GTC
[ENA]
¢þ
>WENV170566165
FKKE01008280
[FKKE] freshwater metagenome; freshwater
3115
3039
-
Asp
GTC
[ENA]
¢þ
>WENV170566258
FKKE01012384
[FKKE] freshwater metagenome; freshwater
492
568
+
Asp
GTC
[ENA]
¢þ
>WENV170962854
MRWF01028581
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
238481
238405
-
Asp
GTC
[ENA]
¢þ
>WENV170962855
MRWF01028581
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
237946
237870
-
Asp
GTC
[ENA]
¢þ
>WENV170963049
MRWG01000005
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
454748
454824
+
Asp
GTC
[ENA]
¢þ
>WENV170963050
MRWG01000005
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
455283
455359
+
Asp
GTC
[ENA]
¢þ
>WENV171003346
NNBT01005663
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
3364
3440
+
Asp
GTC
[ENA]
¢þ
>C191005659
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
559390
559314
-
Asp
GTC
-
¡û
>C191005660
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
559253
559177
-
Asp
GTC
-
¡û
>C191188845
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
2753970
2753894
-
Asp
GTC
-
¡û
>W09133873
ACQR01000021
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
51331
51255
-
Asp
GTC
[ENA]
¡û
>W09133874
ACQR01000021
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
51194
51118
-
Asp
GTC
[ENA]
¡û
>WENV024192
AACY020786731
Marine microbial communities from Global Ocean Sampling (GOS)
195
119
-
Asp
GTC
[ENA]
>W1911139273
NOXT01000114
Alphaproteobacteria
Sandarakinorhabdus cyanobacteriorum TH057 [NOXT]
23124
23200
+
Asp
GTC
[ENA]
¡û
>W1911705867
QORU01000002
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
154378
154302
-
Asp
GTC
[ENA]
¡û
>W1911708691
QOZQ01000009
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
253302
253378
+
Asp
GTC
[ENA]
¡û
>W1810121203
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
331760
331836
+
Asp
GTC
[ENA]
¡û
>W1810195698
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
668122
668046
-
Asp
GTC
[ENA]
¡û
>W1810503507
QBKE01000002
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
264620
264544
-
Asp
GTC
[ENA]
¡û
>W1810503508
QBKE01000002
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
264480
264404
-
Asp
GTC
[ENA]
¡û
>W1810682802
QKVK01000006
Alphaproteobacteria
Aestuariivirga litoralis KCTC 52945 [QKVK]
292725
292649
-
Asp
GTC
[ENA]
¡û
>C11100709
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
478934
478858
-
Asp
GTC
[Ensembl]
¡û
>C11100710
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
478797
478721
-
Asp
GTC
[Ensembl]
¡û
>W1511398028
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
626387
626311
-
Asp
GTC
[ENA]
¡û
>W1511398029
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
626239
626163
-
Asp
GTC
[ENA]
¡û
>W11123392
ADUH01000251
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
63445
63521
+
Asp
GTC
[ENA]
¡û
>W1610071240
BCTX01000041
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
191
115
-
Asp
GTC
[ENA]
¡û
>W1610071246
BCTX01000054
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
31012
30936
-
Asp
GTC
[ENA]
¡û
>W1610649200
LJHV01000002
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
372524
372600
+
Asp
GTC
[ENA]
¡û
>W1610895757
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
368562
368638
+
Asp
GTC
[ENA]
¡û
>W1610895758
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
369369
369445
+
Asp
GTC
[ENA]
¡û
>W1610895813
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
93226
93150
-
Asp
GTC
[ENA]
¡û
>W1610895814
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
92967
92891
-
Asp
GTC
[ENA]
¡û
>W1610914525
LSKF01000102
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
1625
1701
+
Asp
GTC
[ENA]
¡û
>W1710068605
BCTX01000041
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
191
115
-
Asp
GTC
[ENA]
¡û
>W1710068611
BCTX01000054
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
31012
30936
-
Asp
GTC
[ENA]
¡û
>W1710505457
FMTS01000001
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
214084
214160
+
Asp
GTC
[ENA]
¡û
>W1710505458
FMTS01000001
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
214362
214438
+
Asp
GTC
[ENA]
¡û
>W1710513764
FNAK01000002
Alphaproteobacteria
Kordiimonas lacus [FNAK]
366189
366265
+
Asp
GTC
[ENA]
¡û
>W1710513765
FNAK01000002
Alphaproteobacteria
Kordiimonas lacus [FNAK]
366996
367072
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK