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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195299 (9 seq.)
>W1710799008
LJUF01000009
Planctomycetota
Phycisphaerae bacterium SM23_33 [LJUF]
14027
14102
+
Cys
GCA
[ENA]
¡û
>WENV180086483
MPMD02474693
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
343
416
+
Cys
GCA
[ENA]
¡û
>WENV183801665
PVBE010692743
[PVBE] marine metagenome; water
593
520
-
Cys
GCA
[ENA]
¡û
>WENV183807171
PVBE011176752
[PVBE] marine metagenome; water
12700
12627
-
Cys
GCA
[ENA]
¡û
>WENV170017060
BARS01044889
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
358
283
-
Cys
GCA
[ENA]
¡û
>WENV170396487
CEUC01297359
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
424
497
+
Cys
GCA
[ENA]
¡û
>WENV170672627
LAZR01000500
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
5141
5214
+
Cys
GCA
[ENA]
¡û
>WENV170674380
LAZR01061374
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
150
223
+
Cys
GCA
[ENA]
¡û
>W1610662965
LJUF01000009
Planctomycetota
Phycisphaerae bacterium SM23_33 [LJUF]
14027
14102
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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