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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195323 (99 seq.)
>A171000817
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
1389653
1389727
+
Tyr
GTA
-
¡û
>A171000835
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2507433
2507359
-
Tyr
GTA
-
¡û
>A171001160
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
528867
528940
+
Tyr
GTA
-
¡û
>A171001189
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1737873
1737800
-
Tyr
GTA
-
¡û
>A171001385
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
518441
518514
+
Tyr
GTA
-
¡û
>A171001412
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
1590452
1590379
-
Tyr
GTA
-
¡û
>A171001580
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2363340
2363414
+
Tyr
GTA
-
¡û
>A171006195
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
498290
498363
+
Tyr
GTA
-
¡û
>A171006223
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1610727
1610654
-
Tyr
GTA
-
¡û
>WENV170681712
LFFM01002241
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
12668
12743
+
Tyr
GTA
[ENA]
¢þ
>WENV170703749
LKMJ01016336
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1161
1236
+
Tyr
GTA
[ENA]
¢þ
>WENV170703793
LKMJ01016841
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1163
1236
+
Tyr
GTA
[ENA]
¢þ
>W1910186244
CCDK010000004
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
153810
153884
+
Tyr
GTA
[ENA]
¡û
>W1910186261
CCDK010000006
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
4743
4669
-
Tyr
GTA
[ENA]
¡û
>W1910193535
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
391506
391579
+
Tyr
GTA
[ENA]
¡û
>W1910193554
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1548541
1548468
-
Tyr
GTA
[ENA]
¡û
>W1910226989
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
648901
648975
+
Tyr
GTA
[ENA]
¡û
>W1910229600
FOAD01000001
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
194231
194305
+
Tyr
GTA
[ENA]
¡û
>W1910229638
FOAD01000007
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
7687
7761
+
Tyr
GTA
[ENA]
¡û
>W1910229747
FODV01000002
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
537896
537970
+
Tyr
GTA
[ENA]
¡û
>W1910229771
FODV01000006
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
175899
175825
-
Tyr
GTA
[ENA]
¡û
>W1910230684
FOYS01000001
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
679908
679982
+
Tyr
GTA
[ENA]
¡û
>W1910230721
FOYS01000007
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
188291
188218
-
Tyr
GTA
[ENA]
¡û
>W1911580809
PEND01000002
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
531698
531771
+
Tyr
GTA
[ENA]
¡û
>W1911580821
PEND01000006
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
13090
13164
+
Tyr
GTA
[ENA]
¡û
>W1911629750
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
7469
7543
+
Tyr
GTA
[ENA]
¡û
>W1911629771
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1079678
1079605
-
Tyr
GTA
[ENA]
¡û
>W1911629804
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
576762
576835
+
Tyr
GTA
[ENA]
¡û
>W1911629809
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1637859
1637785
-
Tyr
GTA
[ENA]
¡û
>W1911629870
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
7220
7294
+
Tyr
GTA
[ENA]
¡û
>W1911629887
PSYU01000003
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
427863
427789
-
Tyr
GTA
[ENA]
¡û
>W1911629902
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
255579
255653
+
Tyr
GTA
[ENA]
¡û
>W1911629907
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
1364416
1364342
-
Tyr
GTA
[ENA]
¡û
>W1911629967
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
935056
934983
-
Tyr
GTA
[ENA]
¡û
>W1911629995
PSYW01000005
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
7251
7325
+
Tyr
GTA
[ENA]
¡û
>W1911630002
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
255579
255653
+
Tyr
GTA
[ENA]
¡û
>W1911630007
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
1367154
1367080
-
Tyr
GTA
[ENA]
¡û
>W1911630054
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
589824
589897
+
Tyr
GTA
[ENA]
¡û
>W1911630059
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1749333
1749260
-
Tyr
GTA
[ENA]
¡û
>W1911655673
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
7469
7543
+
Tyr
GTA
[ENA]
¡û
>W1911655692
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1074511
1074438
-
Tyr
GTA
[ENA]
¡û
>W1911655716
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
7246
7319
+
Tyr
GTA
[ENA]
¡û
>W1911655738
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1165792
1165719
-
Tyr
GTA
[ENA]
¡û
>W1911682229
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
1757103
1757029
-
Tyr
GTA
[ENA]
¡û
>W1911709483
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
576762
576835
+
Tyr
GTA
[ENA]
¡û
>W1911709488
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1637859
1637785
-
Tyr
GTA
[ENA]
¡û
>W1911709532
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
576762
576835
+
Tyr
GTA
[ENA]
¡û
>W1911709537
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1637859
1637785
-
Tyr
GTA
[ENA]
¡û
>W1911717759
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
15401
15475
+
Tyr
GTA
[ENA]
¡û
>W1911717777
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1253100
1253026
-
Tyr
GTA
[ENA]
¡û
>W1610000776
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
893504
893430
-
Tyr
GTA
[ENA]
¡û
>W1610000782
ABTX01000003
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
10402
10476
+
Tyr
GTA
[ENA]
¡û
>W1610011503
ANPG01000079
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
8804
8878
+
Tyr
GTA
[ENA]
¡û
>W1610011762
AOHT01000014
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
12552
12626
+
Tyr
GTA
[ENA]
¡û
>W1610011763
AOHT01000014
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
12642
12716
+
Tyr
GTA
[ENA]
¡û
>W1610011778
AOHT01000048
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
162656
162730
+
Tyr
GTA
[ENA]
¡û
>W1610011779
AOHT01000048
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
162737
162811
+
Tyr
GTA
[ENA]
¡û
>W1610011794
AOHU01000030
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
13451
13378
-
Tyr
GTA
[ENA]
¡û
>W1610011821
AOHU01000098
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
69066
68993
-
Tyr
GTA
[ENA]
¡û
>W1610011848
AOHV01000024
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
93314
93388
+
Tyr
GTA
[ENA]
¡û
>W1610013451
AOLD01000010
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
7485
7559
+
Tyr
GTA
[ENA]
¡û
>W1610013462
AOLD01000030
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
101226
101152
-
Tyr
GTA
[ENA]
¡û
>W1610013463
AOLD01000030
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
101129
101055
-
Tyr
GTA
[ENA]
¡û
>W1610013521
AOLE01000016
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
6260
6334
+
Tyr
GTA
[ENA]
¡û
>W1610013522
AOLE01000016
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
6350
6424
+
Tyr
GTA
[ENA]
¡û
>W1610013532
AOLE01000022
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
78921
78847
-
Tyr
GTA
[ENA]
¡û
>W1610013533
AOLE01000022
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
78830
78756
-
Tyr
GTA
[ENA]
¡û
>W1610013559
AOLF01000015
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
7250
7176
-
Tyr
GTA
[ENA]
¡û
>W1610013598
AOLF01000037
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
14870
14944
+
Tyr
GTA
[ENA]
¡û
>W1610013611
AOLG01000009
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
122914
122988
+
Tyr
GTA
[ENA]
¡û
>W1610013624
AOLG01000014
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
158791
158717
-
Tyr
GTA
[ENA]
¡û
>W1610013671
AOLH01000013
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
7455
7529
+
Tyr
GTA
[ENA]
¡û
>W1610013695
AOLH01000025
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
9123
9050
-
Tyr
GTA
[ENA]
¡û
>W1610013706
AOLI01000012
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
238591
238517
-
Tyr
GTA
[ENA]
¡û
>W1610013746
AOLI01000030
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
38283
38357
+
Tyr
GTA
[ENA]
¡û
>W1610013764
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
379245
379172
-
Tyr
GTA
[ENA]
¡û
>W1610013765
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
379157
379084
-
Tyr
GTA
[ENA]
¡û
>W1610013792
AOLJ01000020
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
7306
7379
+
Tyr
GTA
[ENA]
¡û
>W1610013793
AOLJ01000020
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
7394
7467
+
Tyr
GTA
[ENA]
¡û
>W1610013808
AOLK01000011
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
534554
534628
+
Tyr
GTA
[ENA]
¡û
>W1610013827
AOLK01000018
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
158106
158032
-
Tyr
GTA
[ENA]
¡û
>W1610013854
AOLL01000006
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
7515
7589
+
Tyr
GTA
[ENA]
¡û
>W1610013872
AOLL01000011
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
523657
523584
-
Tyr
GTA
[ENA]
¡û
>W1610013918
AOLM01000011
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
130409
130335
-
Tyr
GTA
[ENA]
¡û
>W1610013937
AOLM01000018
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
35686
35612
-
Tyr
GTA
[ENA]
¡û
>W1610013955
AOLN01000001
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
6601
6675
+
Tyr
GTA
[ENA]
¡û
>W1610013998
AOLN01000018
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
735270
735196
-
Tyr
GTA
[ENA]
¡û
>W1610014006
AOLO01000002
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
7536
7609
+
Tyr
GTA
[ENA]
¡û
>W1610014029
AOLO01000007
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
353091
353018
-
Tyr
GTA
[ENA]
¡û
>W1610014092
AOLP01000017
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
172606
172533
-
Tyr
GTA
[ENA]
¡û
>W1610014095
AOLP01000018
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
7141
7215
+
Tyr
GTA
[ENA]
¡û
>W1610029945
AXZD01000010
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
115212
115286
+
Tyr
GTA
[ENA]
¡û
>W1610784284
LOEP01000013
Euryarchaeota
Haloferax sp. Q22 [LOEP]
3549
3476
-
Tyr
GTA
[ENA]
¡û
>W1610784307
LOEP01000029
Euryarchaeota
Haloferax sp. Q22 [LOEP]
7354
7427
+
Tyr
GTA
[ENA]
¡û
>W1610799823
LOPV01000002
Euryarchaeota
Haloferax profundi SB29 [LOPV]
5917
5991
+
Tyr
GTA
[ENA]
¡û
>W1610799851
LOPV01000197
Euryarchaeota
Haloferax profundi SB29 [LOPV]
103
29
-
Tyr
GTA
[ENA]
¡û
>W1610799887
LOPW01000045
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
95934
95860
-
Tyr
GTA
[ENA]
¡û
>W1610799903
LOPW01000059
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
169159
169086
-
Tyr
GTA
[ENA]
¡û
>W1610925020
LTAZ01000001
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
114739
114813
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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