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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195337 (23 seq.)
>C171098270
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
134206
134282
+
Ile
GAT
-
¡û
>C171098279
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
340384
340460
+
Ile
GAT
-
¡û
>C171098334
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2064572
2064496
-
Ile
GAT
-
¡û
>C007979
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
11738
11814
+
Ile
GAT
[Ensembl]
¡û
>C007988
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
186329
186405
+
Ile
GAT
[Ensembl]
¡û
>C018164
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
267134
267210
+
Ile
GAT
[Ensembl]
¡û
>WENV180667763
OCVV011243473
[OCVV] gut metagenome; gut
141
216
+
Ile
GAT
[ENA]
¢þ
>WENV180667764
OCVV011243473
[OCVV] gut metagenome; gut
141
216
+
Ile
GAT
[ENA]
¢þ
>WENV180681107
OCVV012741779
[OCVV] gut metagenome; gut
164
90
-
Ile
GAT
[ENA]
¢þ
>WENV180681108
OCVV012741779
[OCVV] gut metagenome; gut
164
90
-
Ile
GAT
[ENA]
¢þ
>WENV170562878
CZCB01006578
[CZCB] anaerobic digester metagenome; anaerobic digester
418
494
+
Ile
GAT
[ENA]
¢þ
>WENV170689523
LFRM01298815
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
179
103
-
Ile
GAT
[ENA]
¢þ
>W09105161
AAOP01000025
Bacillota
Desulforamulus reducens MI-1 [AAOP]
43424
43500
+
Ile
GAT
[ENA]
¡û
>W09135915
BAAC01000092
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
19477
19401
-
Ile
GAT
[ENA]
¡û
>W141779337
JONT01000003
Bacillota
Desulfofalx alkaliphila DSM 12257 [JONT]
178376
178452
+
Ile
GAT
[ENA]
¡û
>W1910004773
AWQQ01000055
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
81879
81803
-
Ile
GAT
[ENA]
¡û
>W1911661991
QFFZ01000174
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
127
203
+
Ile
GAT
[ENA]
¡û
>ENV09001720
ACQI01003615
Hydrothermal vent metagenome LCHCB.C1
4406
4330
-
Ile
GAT
[ENA]
¡û
>C11106892
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
12311
12387
+
Ile
GAT
[Ensembl]
¡û
>C11106901
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
183630
183706
+
Ile
GAT
[Ensembl]
¡û
>C11107315
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
253740
253816
+
Ile
GAT
[Ensembl]
¡û
>C11107357
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
2461046
2460970
-
Ile
GAT
[Ensembl]
¡û
>W1710590062
FRAR01000019
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
120733
120657
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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