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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195351 (24 seq.)
>W1711340595
MCBT01000046
Gammaproteobacteria
Shewanella colwelliana [MCBT]
229475
229399
-
Met
CAT
[ENA]
¡û
>W131146058
AQGQ01000056
Gammaproteobacteria
Aeromonas molluscorum 848 [AQGQ]
11732
11808
+
Met
CAT
[ENA]
¡û
>w021079
AAVJ01000015
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
105551
105478
-
Met
CAT
[ENA]
¡û
>W08005689
ABIC01000033
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
36265
36192
-
Met
CAT
[ENA]
¡û
>W141227827
BALM01000001
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
305433
305357
-
Met
CAT
[ENA]
¡û
>C08010253
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1169018
1168945
-
Met
CAT
[Ensembl]
¡û
>C08009934
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1234477
1234404
-
Met
CAT
[Ensembl]
¡û
>W141276811
JAEC01000005
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
43824
43900
+
Met
CAT
[ENA]
¡û
>WENV170022368
BCQK01007197
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1745
1669
-
Met
CAT
[ENA]
¢þ
>WENV170023424
BCQK01252484
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
126
202
+
Met
CAT
[ENA]
¢þ
>WENV170023471
BCQK01261132
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
38
114
+
Met
CAT
[ENA]
¢þ
>C181061327
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
3250533
3250609
+
Met
CAT
-
¡û
>C181214248
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
1444782
1444706
-
Met
CAT
-
¡û
>C191017663
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
412976
412900
-
Met
CAT
-
¡û
>C191173187
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1083457
1083533
+
Met
CAT
-
¡û
>C191185913
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1090022
1089946
-
Met
CAT
-
¡û
>C191187213
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
3250750
3250826
+
Met
CAT
-
¡û
>W1910905497
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
275723
275799
+
Met
CAT
[ENA]
¡û
>W1911551632
OXJV01000001
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
540708
540632
-
Met
CAT
[ENA]
¡û
>W1911581960
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
24748
24824
+
Met
CAT
[ENA]
¡û
>W1911710060
QPQT01000009
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
44014
44090
+
Met
CAT
[ENA]
¡û
>W1810786570
QRCS01000014
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
374790
374866
+
Met
CAT
[ENA]
¡û
>W1511302136
JPII01000028
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
145606
145530
-
Met
CAT
[ENA]
¡û
>W1511366819
JSFF01000021
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
22324
22400
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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