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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195371 (37 seq.)
>W1710876974
LMPS01000004
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
1601
1527
-
Arg
TCT
[ENA]
¡û
>W1711043805
LRML01000016
Bacteroidota
Rufibacter roseus [LRML]
55845
55769
-
Arg
TCT
[ENA]
¡û
>W1711167080
LVWA01000005
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
325029
325103
+
Arg
TCT
[ENA]
¡û
>W1711503574
MKTS01000013
Bacteroidota
Mucilaginibacter sp. 44-25 [MKTS]
206059
205985
-
Arg
TCT
[ENA]
¡û
>W131087906
AODQ01000060
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
20771
20695
-
Arg
TCT
[ENA]
¡û
>W131167816
ARDO01000006
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
259946
260022
+
Arg
TCT
[ENA]
¡û
>W131228416
AUFX01000009
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
410007
409931
-
Arg
TCT
[ENA]
¡û
>WENV181169005
OEIV010000105
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23841
23767
-
Arg
TCT
[ENA]
¢þ
>W141151953
AXBK01000015
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
531620
531546
-
Arg
TCT
[ENA]
¡û
>W141152202
AXBP01000016
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
797052
796978
-
Arg
TCT
[ENA]
¡û
>W141212161
AZQN01000004
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
281621
281697
+
Arg
TCT
[ENA]
¡û
>WENV183740142
PJUF01000462
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7783
7709
-
Arg
TCT
[ENA]
¢þ
>WENV170551533
CXWJ01011488
[CXWJ] wastewater metagenome; activated sludge
1968
2044
+
Arg
TCT
[ENA]
¢þ
>WENV171003667
NNBU01004050
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
589
665
+
Arg
TCT
[ENA]
¢þ
>WENV171003844
NNBV01002063
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1786
1710
-
Arg
TCT
[ENA]
¢þ
>C191018715
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
2745550
2745476
-
Arg
TCT
-
¡û
>W1911749353
QWGE01000001
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
529066
528992
-
Arg
TCT
[ENA]
¡û
>W1810173097
PJMU01000003
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
244613
244539
-
Arg
TCT
[ENA]
¡û
>W1810400047
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
531656
531730
+
Arg
TCT
[ENA]
¡û
>W1810483285
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
2758207
2758133
-
Arg
TCT
[ENA]
¡û
>W1810503709
QBKI01000005
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
150760
150686
-
Arg
TCT
[ENA]
¡û
>W1810533388
QCZK01000007
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
134073
134147
+
Arg
TCT
[ENA]
¡û
>W1810572885
QEKI01000014
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
19622
19548
-
Arg
TCT
[ENA]
¡û
>W1810594629
QGDC01000008
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
79406
79331
-
Arg
TCT
[ENA]
¡û
>W1810789508
QRGR01000021
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
19291
19217
-
Arg
TCT
[ENA]
¡û
>C151055995
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
3485402
3485478
+
Arg
TCT
[Ensembl]
¡û
>C151071898
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
2276690
2276616
-
Arg
TCT
[Ensembl]
¡û
>C161043262
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
5071620
5071546
-
Arg
TCT
[Ensembl]
¡û
>C161076992
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3411588
3411662
+
Arg
TCT
-
¡û
>W121084782
AKIS01000116
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
58799
58873
+
Arg
TCT
[ENA]
¡û
>W1610739320
LMPS01000004
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
1601
1527
-
Arg
TCT
[ENA]
¡û
>W1610885104
LRML01000016
Bacteroidota
Rufibacter roseus [LRML]
55845
55769
-
Arg
TCT
[ENA]
¡û
>W1710540991
FNXY01000006
Bacteroidota
Dyadobacter koreensis [FNXY]
218538
218614
+
Arg
TCT
[ENA]
¡û
>W1710562149
FOOT01000001
Bacteroidota
Pontibacter chinhatensis [FOOT]
1235082
1235158
+
Arg
TCT
[ENA]
¡û
>W1710579023
FPCA01000011
Bacteroidota
Pontibacter akesuensis [FPCA]
12166
12092
-
Arg
TCT
[ENA]
¡û
>W1710597889
FTNM01000003
Bacteroidota
Pontibacter lucknowensis [FTNM]
458344
458418
+
Arg
TCT
[ENA]
¡û
>W1710600001
FTPP01000001
Bacteroidota
Pontibacter indicus [FTPP]
58995
59069
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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