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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195436 (51 seq.)
>W1710853015
LLWF02000074
Alphaproteobacteria
Roseomonas mucosa [LLWF]
18888
18812
-
Trp
CCA
[ENA]
¡û
>W1710893567
LNEW01000199
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
1347
1423
+
Trp
CCA
[ENA]
¡û
>W1711511633
MLCO01000454
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
993
917
-
Trp
CCA
[ENA]
¡û
>C171033108
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
2352356
2352280
-
Trp
CCA
-
¡û
>C171033147
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
2963694
2963770
+
Trp
CCA
-
¡û
>C171039560
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
3039209
3039133
-
Trp
CCA
-
¡û
>W131164891
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
2385266
2385190
-
Trp
CCA
[ENA]
¡û
>W131043736
AMPS01000014
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
4468
4392
-
Trp
CCA
[ENA]
¡û
>WENV180692554
OCZS010610457
[OCZS] soil metagenome; soil
255
331
+
Trp
CCA
[ENA]
¢þ
>WENV181295963
OFHJ01002982
[OFHJ] soil metagenome; Clay
3012
2936
-
Trp
CCA
[ENA]
¢þ
>W141226086
BAJT01000020
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
26346
26422
+
Trp
CCA
[ENA]
¡û
>W141276657
JADY01000051
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
1470
1546
+
Trp
CCA
[ENA]
¡û
>WENV170018850
BBPD01001481
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10
86
+
Trp
CCA
[ENA]
¢þ
>WENV170020166
BBPE01003583
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10
86
+
Trp
CCA
[ENA]
¢þ
>WENV170709443
LNFM01000356
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
133986
133910
-
Trp
CCA
[ENA]
¢þ
>WENV170713944
LNFM01047868
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7066
6990
-
Trp
CCA
[ENA]
¢þ
>WENV170714119
LNFM01055302
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1753
1829
+
Trp
CCA
[ENA]
¢þ
>WENV170714343
LNFM01068856
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1108
1184
+
Trp
CCA
[ENA]
¢þ
>WENV170714734
LNFM01096461
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1035
1111
+
Trp
CCA
[ENA]
¢þ
>WENV170714896
LNFM01112690
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
184
260
+
Trp
CCA
[ENA]
¢þ
>WENV170998947
MWWJ01172697
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
171
247
+
Trp
CCA
[ENA]
¢þ
>C181102034
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3957192
3957268
+
Trp
CCA
-
¡û
>C191090638
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
665348
665424
+
Trp
CCA
-
¡û
>C191158413
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
835340
835416
+
Trp
CCA
-
¡û
>W141558720
JHWD01000007
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
278712
278636
-
Trp
CCA
[ENA]
¡û
>W141561213
JHYG01000011
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
32940
32864
-
Trp
CCA
[ENA]
¡û
>W141779224
JONP01000065
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
746
822
+
Trp
CCA
[ENA]
¡û
>W1910006544
BAGS01000028
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
28328
28252
-
Trp
CCA
[ENA]
¡û
>W1910990449
NKTX01000037
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
6082
6006
-
Trp
CCA
[ENA]
¡û
>W1911768606
QXGS01000046
Alphaproteobacteria
Pseudoroseomonas vastitatis CPCC 101021 [QXGS]
728
804
+
Trp
CCA
[ENA]
¡û
>W1810000564
BEWK01000028
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
17941
18017
+
Trp
CCA
[ENA]
¡û
>W1810062066
PDNU01000070
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
15960
15884
-
Trp
CCA
[ENA]
¡û
>W1810062325
PDOA01000011
Alphaproteobacteria
Pseudoroseomonas aestuarii JR1/69-1-13 [PDOA]
115343
115267
-
Trp
CCA
[ENA]
¡û
>W1810605153
QGNA01000005
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
404756
404680
-
Trp
CCA
[ENA]
¡û
>W1810684782
QKYU01000026
Alphaproteobacteria
Humitalea rosea DSM 24525 [QKYU]
18057
18133
+
Trp
CCA
[ENA]
¡û
>W1810692354
QLIX01000041
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
281
357
+
Trp
CCA
[ENA]
¡û
>W10119156
ADVL01000320
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
1012
1088
+
Trp
CCA
[ENA]
¡û
>W11125376
ADVL01000320
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
1012
1088
+
Trp
CCA
[ENA]
¡û
>W1610040661
BALE01000022
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
16004
16080
+
Trp
CCA
[ENA]
¡û
>W1610040712
BAMU01000022
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
68847
68923
+
Trp
CCA
[ENA]
¡û
>W121009591
AGEZ01000160
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
18618
18542
-
Trp
CCA
[ENA]
¡û
>W121113868
ALOX01000201
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
349
425
+
Trp
CCA
[ENA]
¡û
>W1610716124
LLWF01000029
Alphaproteobacteria
Roseomonas mucosa [LLWF]
348
424
+
Trp
CCA
[ENA]
¡û
>W1610753833
LNEW01000199
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
1347
1423
+
Trp
CCA
[ENA]
¡û
>W1710037859
BALE01000022
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
16004
16080
+
Trp
CCA
[ENA]
¡û
>W1710037910
BAMU01000022
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
68847
68923
+
Trp
CCA
[ENA]
¡û
>W1710084299
BDLP01000603
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
455
531
+
Trp
CCA
[ENA]
¡û
>W1710510507
FMXZ01000045
Alphaproteobacteria
Belnapia rosea [FMXZ]
236
312
+
Trp
CCA
[ENA]
¡û
>W1710513121
FMZX01000042
Alphaproteobacteria
Belnapia rosea [FMZX]
15792
15716
-
Trp
CCA
[ENA]
¡û
>W1710567315
FOSQ01000006
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
256118
256042
-
Trp
CCA
[ENA]
¡û
>W1710588308
FQZF01000045
Alphaproteobacteria
Roseomonas rosea [FQZF]
14732
14656
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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