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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195529 (13 seq.)
>C171129198
LT605205
Bacteroidota
Proteiniphilum saccharofermentans M3/6 [LT605205]
4345164
4345090
-
Met
CAT
-
¡û
>WENV170643763
JMBV01000543
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
742
818
+
Met
CAT
[ENA]
¢þ
>WENV170644254
JMBW01002830
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
374
450
+
Met
CAT
[ENA]
¢þ
>WENV170689704
LFRM01307881
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
942
1018
+
Met
CAT
[ENA]
¢þ
>WENV170721759
LSQX01202985
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3637
3711
+
Met
CAT
[ENA]
¢þ
>WENV170724024
LSQX01289866
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2289
2215
-
Met
CAT
[ENA]
¢þ
>C181000147
AP014609
Bacteroidota
Blattabacterium cuenoti BPAY [AP014609]
619510
619583
+
Met
CAT
-
¡û
>C191000058
AP014608
Bacteroidota
Blattabacterium cuenoti STAT [AP014608]
618705
618780
+
Met
CAT
-
¡û
>C141003950
CP005488
Bacteroidota
Blattabacterium sp. [Nauphoeta cinerea] [CP005488]
30118
30045
-
Met
CAT
[Ensembl]
¡û
>W1810076233
PEIH01000005
Bacteroidota
Bacteroidetes bacterium endosymbiont of Geopemphigus sp. of Geopemphigus sp. GspS2-BC2016 [PEIH]
424481
424555
+
Met
CAT
[ENA]
¡û
>C10101651
CP001487
Bacteroidota
Blattabacterium sp. [Blattella germanica] str. Bge Alboraia [CP001487]
29339
29264
-
Met
CAT
[Ensembl]
¡û
>W1510562706
CTEJ01000002
Bacteroidota
Lascolabacillus massiliensis SIT8 [CTEJ]
1225706
1225630
-
Met
CAT
[ENA]
¡û
>C131004629
CP003605
Bacteroidota
Blattabacterium sp. [Blatta orientalis] str. Tarazona [CP003605]
31118
31045
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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