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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195535 (45 seq.)
>W1711004669
LQIY01000006
Gammaproteobacteria
Vibrio sp. MEBiC08052 [LQIY]
124239
124315
+
Arg
TCT
[ENA]
¡û
>W1711463198
MJIL01000069
Gammaproteobacteria
Photobacterium proteolyticum 12·î13Æü [MJIL]
319837
319913
+
Arg
TCT
[ENA]
¡û
>C171085098
CP018835
Gammaproteobacteria
Vibrio gazogenes ATCC 43942 [CP018835, CP018836]
3193540
3193616
+
Arg
TCT
-
¡û
>W131188190
ASAJ01000006
Gammaproteobacteria
Vibrio gazogenes ATCC 43941 [ASAJ]
50043
50119
+
Arg
TCT
[ENA]
¡û
>W131235030
AULG01000003
Gammaproteobacteria
Photobacterium halotolerans DSM 18316 [AULG]
147277
147201
-
Arg
TCT
[ENA]
¡û
>WENV180017942
FSXV01000178
[FSXV] metagenome; soil
44867
44791
-
Arg
TCT
[ENA]
¢þ
>W141246850
CANV01000043
Gammaproteobacteria
Vibrio nigripulchritudo ENn2 [CANV]
219750
219826
+
Arg
TCT
[ENA]
¡û
>W141246878
CANY01000089
Gammaproteobacteria
Vibrio nigripulchritudo MADA3020 [CANY]
232756
232680
-
Arg
TCT
[ENA]
¡û
>W141246903
CAOB01000089
Gammaproteobacteria
Vibrio nigripulchritudo SFn27 [CAOB]
113296
113220
-
Arg
TCT
[ENA]
¡û
>W141246912
CAOC01000232
Gammaproteobacteria
Vibrio nigripulchritudo SFn118 [CAOC]
17885
17809
-
Arg
TCT
[ENA]
¡û
>W141246918
CAOD01000102
Gammaproteobacteria
Vibrio nigripulchritudo SFn135 [CAOD]
219750
219826
+
Arg
TCT
[ENA]
¡û
>W141246926
CAOE01000118
Gammaproteobacteria
Vibrio nigripulchritudo SO65 [CAOE]
68325
68249
-
Arg
TCT
[ENA]
¡û
>WENV170655597
JTFN01049867
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
943
1019
+
Arg
TCT
[ENA]
¢þ
>WENV170656151
JTFO01001174
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
5204
5280
+
Arg
TCT
[ENA]
¢þ
>C181201275
CP031472
Gammaproteobacteria
Vibrio coralliilyticus RE22 [CP031472, CP031473]
93596
93672
+
Arg
TCT
-
¡û
>W141778736
JONG01000014
Gammaproteobacteria
Vibrio rhizosphaerae DSM 18581 [JONG]
40337
40413
+
Arg
TCT
[ENA]
¡û
>W1910339137
FSSB01000018
Gammaproteobacteria
Vibrio spartinae CECT 9026 [FSSB]
150160
150236
+
Arg
TCT
[ENA]
¡û
>W1910378464
FULE01000010
Gammaproteobacteria
Vibrio ruber DSM 16370 CECT 7878 [FULE]
14104
14180
+
Arg
TCT
[ENA]
¡û
>W1910378548
FULF01000030
Gammaproteobacteria
Vibrio gazogenes type strain: CECT 5068 [FULF]
1324
1400
+
Arg
TCT
[ENA]
¡û
>C141012043
FO203526
Gammaproteobacteria
Vibrio nigripulchritudo SFn1 [FO203526]
2610784
2610708
-
Arg
TCT
[Ensembl]
¡û
>W1910498769
FXXI01000001
Gammaproteobacteria
Vibrio mangrovi CECT 7927 [FXXI]
916799
916723
-
Arg
TCT
[ENA]
¡û
>W1911204012
NRHV01000006
Gammaproteobacteria
Vibrio coralliilyticus 080116A [NRHV]
227562
227486
-
Arg
TCT
[ENA]
¡û
>W1911817693
QZMS01000007
Gammaproteobacteria
Photobacterium salinisoli LAM9072 [QZMS]
1689424
1689348
-
Arg
TCT
[ENA]
¡û
>W1810406161
PYME01000002
Gammaproteobacteria
Photobacterium gaetbulicola DSM 26887 [PYME]
112266
112190
-
Arg
TCT
[ENA]
¡û
>W1810406313
PYMF01000041
Gammaproteobacteria
Photobacterium aphoticum DSM 25995 [PYMF]
18340
18264
-
Arg
TCT
[ENA]
¡û
>W1810406732
PYMI01000001
Gammaproteobacteria
Photobacterium ganghwense JCM 12487 [PYMI]
792083
792007
-
Arg
TCT
[ENA]
¡û
>W1810698163
QLYY01000020
Gammaproteobacteria
Vibrio tetraodonis A511 [QLYY]
10663
10739
+
Arg
TCT
[ENA]
¡û
>C151007796
CP005974
Gammaproteobacteria
Photobacterium gaetbulicola Gung47 [CP005973, CP005974]
3127068
3126992
-
Arg
TCT
[Ensembl]
¡û
>C151046971
CP009264
Gammaproteobacteria
Vibrio coralliilyticus OCN014 [CP009264, CP009265]
2286076
2286000
-
Arg
TCT
[Ensembl]
¡û
>C151055900
CP009617
Gammaproteobacteria
Vibrio coralliilyticus RE98 [CP009617, CP009618]
858000
858076
+
Arg
TCT
[Ensembl]
¡û
>W10107507
ACZN01000015
Gammaproteobacteria
Vibrio coralliilyticus ATCC BAA-450 [ACZN]
465485
465409
-
Arg
TCT
[ENA]
¡û
>W11109894
ACZN01000015
Gammaproteobacteria
Vibrio coralliilyticus ATCC BAA-450 [ACZN]
465485
465409
-
Arg
TCT
[ENA]
¡û
>W1511483742
JWLZ01000198
Gammaproteobacteria
Photobacterium gaetbulicola AD005a [JWLZ]
142569
142645
+
Arg
TCT
[ENA]
¡û
>W1511497116
JWYV01000001
Gammaproteobacteria
Photobacterium halotolerans MELD1 [JWYV]
209739
209663
-
Arg
TCT
[ENA]
¡û
>W1511517972
JXXU01000022
Gammaproteobacteria
Vibrio neptunius S2394 [JXXU]
65077
65001
-
Arg
TCT
[ENA]
¡û
>W11144357
AEQS01000221
Gammaproteobacteria
Vibrio coralliilyticus P1 [AEQS]
61463
61539
+
Arg
TCT
[ENA]
¡û
>W1511638816
LDOT01000024
Gammaproteobacteria
Photobacterium aquae CGMCC 1.12159 [LDOT]
91274
91198
-
Arg
TCT
[ENA]
¡û
>W1511638939
LDOU01000030
Gammaproteobacteria
Photobacterium ganghwense DSM 22954 [LDOU]
21866
21942
+
Arg
TCT
[ENA]
¡û
>W1511639004
LDOV01000031
Gammaproteobacteria
Photobacterium aphoticum DSM 25995 [LDOV]
364
440
+
Arg
TCT
[ENA]
¡û
>C161098992
CP016556
Gammaproteobacteria
Vibrio coralliilyticus 58 [CP016556, CP016557]
1013490
1013414
-
Arg
TCT
[Ensembl]
¡û
>W1610616404
LGLS01000002
Gammaproteobacteria
Vibrio coralliilyticus [LGLS]
519566
519490
-
Arg
TCT
[ENA]
¡û
>W1610855263
LQIY01000006
Gammaproteobacteria
Vibrio sp. MEBiC08052 [LQIY]
124239
124315
+
Arg
TCT
[ENA]
¡û
>W1710582846
FQUH01000018
Gammaproteobacteria
Vibrio gazogenes DSM 21264 [FQUH]
26518
26442
-
Arg
TCT
[ENA]
¡û
>W1710601173
FUXB01000004
Gammaproteobacteria
Vibrio cincinnatiensis DSM 19608 [FUXB]
296
220
-
Arg
TCT
[ENA]
¡û
>W1710737650
LGLS01000002
Gammaproteobacteria
Vibrio coralliilyticus [LGLS]
519566
519490
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK