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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195597 (22 seq.)
>W1711589317
MOEB01000002
Alphaproteobacteria
Aerophototrophica crusticola MIMtkB3 [MOEB]
129309
129385
+
Pro
GGG
[ENA]
¡û
>WENV181227965
OFDN01089718
[OFDN] hot springs metagenome; Water
1
77
+
Pro
GGG
[ENA]
¢þ
>W141222893
BACU01000275
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
10926
10850
-
Pro
GGG
[ENA]
¡û
>WENV183736424
PJUC01002921
[PJUC] soil metagenome; Soil enriched on filter paper
2392
2468
+
Pro
GGG
[ENA]
¢þ
>WENV170705623
LNAP01000026
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
80606
80682
+
Pro
GGG
[ENA]
¢þ
>C181058287
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
1564743
1564819
+
Pro
GGG
-
¡û
>C181185926
CP029829
Alphaproteobacteria
Azospirillum ramasamyi M2T2B2 [CP029829]
708601
708677
+
Pro
GGG
-
¡û
>C191170814
CP039650
Alphaproteobacteria
Azospirillum sp. TSA2s TSA2S [CP039642, CP039645, CP039646, CP039647, CP039648, CP039649, CP039650]
2124979
2125055
+
Pro
GGG
-
¡û
>W141803737
JPGX01000463
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
79986
79910
-
Pro
GGG
[ENA]
¡û
>W1910612872
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
6647555
6647479
-
Pro
GGG
[ENA]
¡û
>W1910612980
LGQU01000032
Alphaproteobacteria
Azospirillum sp. TSH20 [LGQU]
148354
148278
-
Pro
GGG
[ENA]
¡û
>W1910613089
LGQW01000015
Alphaproteobacteria
Azospirillum sp. TSH64 [LGQW]
247438
247514
+
Pro
GGG
[ENA]
¡û
>W1910613220
LGQY01000032
Alphaproteobacteria
Azospirillum sp. TSO5 [LGQY]
220367
220291
-
Pro
GGG
[ENA]
¡û
>W1910613301
LGQZ01000121
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
28522
28598
+
Pro
GGG
[ENA]
¡û
>C09108658
CP000613
Alphaproteobacteria
Rhodospirillum centenum SW SW; ATCC 51521 [CP000613]
1369556
1369632
+
Pro
GGG
[Ensembl]
¡û
>W1911139234
NOXS01000032
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
375977
375901
-
Pro
GGG
[ENA]
¡û
>W1810058949
PDKW01000043
Alphaproteobacteria
Azospirillum palustre B2 [PDKW]
1751227
1751151
-
Pro
GGG
[ENA]
¡û
>W1810605698
QGNJ01000005
Alphaproteobacteria
Oleisolibacter albus NAU-10 [QGNJ]
265827
265903
+
Pro
GGG
[ENA]
¡û
>W1511569441
LAJY01000224
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
7293
7217
-
Pro
GGG
[ENA]
¡û
>W11157275
AFBX01000514
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
4716
4640
-
Pro
GGG
[ENA]
¡û
>C121016578
FQ311868
Alphaproteobacteria
Azospirillum lipoferum 4B [FQ311868]
821874
821950
+
Pro
GGG
[Ensembl]
¡û
>C161085679
CP015285
Alphaproteobacteria
Azospirillum humicireducens SgZ-5 [CP015285]
803061
803137
+
Pro
GGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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