This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195621 (22 seq.)
>W1711504169
MKUH01000019
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
48991
49067
+
Met
CAT
[ENA]
¡û
>W131050768
AMXB01000011
Betaproteobacteria
Thauera sp. 27 [AMXB]
113981
113905
-
Met
CAT
[ENA]
¡û
>W131223749
AUCH01000005
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
55104
55028
-
Met
CAT
[ENA]
¡û
>W131050722
AMXA01000012
Betaproteobacteria
Thauera sp. 28 [AMXA]
21537
21461
-
Met
CAT
[ENA]
¡û
>C001327
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
832527
832451
-
Met
CAT
[Ensembl]
¡û
>WENV181415799
OGCL01026307
[OGCL] hot springs metagenome; Hot spring water
978
902
-
Met
CAT
[ENA]
¢þ
>WENV170651500
JRYF01033892
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
602
678
+
Met
CAT
[ENA]
¢þ
>WENV170654620
JRYL01002280
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
1677
1753
+
Met
CAT
[ENA]
¢þ
>WENV170690869
LFRM01367130
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1730
1806
+
Met
CAT
[ENA]
¢þ
>C181042993
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
2457365
2457441
+
Met
CAT
-
¡û
>C181060414
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
2419024
2419100
+
Met
CAT
-
¡û
>C181060452
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
464526
464602
+
Met
CAT
-
¡û
>C181081494
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
123568
123492
-
Met
CAT
-
¡û
>C181165155
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
2424650
2424726
+
Met
CAT
-
¡û
>C181176795
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
2387136
2387212
+
Met
CAT
-
¡û
>W09100878
AADF01000002
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
291381
291457
+
Met
CAT
[ENA]
¡û
>W1810005492
BFBP01000006
Betaproteobacteria
Azospira sp. I13 [BFBP]
27718
27642
-
Met
CAT
[ENA]
¡û
>W1810679142
QKOE01000003
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
185066
185142
+
Met
CAT
[ENA]
¡û
>C121006971
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
1245589
1245513
-
Met
CAT
[Ensembl]
¡û
>C161095114
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
872181
872105
-
Met
CAT
-
¡û
>W1610071716
BCUG01000064
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22688
22764
+
Met
CAT
[ENA]
¡û
>W1710068918
BCUG01000064
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22688
22764
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK